Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20180
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                       67   1e-11
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   3e-09
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     29   3.3  
SB_42215| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_37230| Best HMM Match : PAZ (HMM E-Value=0.035)                     29   4.3  
SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047)                   28   7.5  
SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)                  28   10.0 

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +3

Query: 261 FDNCL-KGPGFKFRLGAKEVISGWDVGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNS 437
           FD+ L +G  F F LG   VI GW+ G+  M +G KRK+  PP +AYG  G+   IPP++
Sbjct: 62  FDSSLDRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHA 121

Query: 438 TLVFEVELKNVK 473
           TL  +VEL  ++
Sbjct: 122 TLYMDVELVEIQ 133


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
 Frame = +3

Query: 288 FKFRLGAKEVISGWDVGVSGMKVGGKRKIICPPGMAYGAKGSPPVIP----PNSTLVFEV 455
           F+F +G   VI G++ GV+GM VG KRKI+ PP +AYG KGS  V       N+TL + +
Sbjct: 148 FEFTIGGGTVIKGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNL 207

Query: 456 ELKNVK 473
           EL +V+
Sbjct: 208 ELFDVR 213


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/97 (20%), Positives = 44/97 (45%)
 Frame = -1

Query: 601 FVLLSVTNEIQVAISTSDWQTYMFHSYNGNQ*SNYLLLKTSVHLTFFNSTSNTKVELGGI 422
           ++ LS+T  +  ++S+   +   F        S   L  ++V L+   + S   ++   I
Sbjct: 443 YMTLSITTGVYTSLSSPGLKNTTFTPSEIVSPSISTLHTSTVELSSTGNVSMLTLKTNSI 502

Query: 421 TGGEPFAPYAMPGGQIIFLLPPTFIPETPTSQPLMTS 311
               P    ++P    + +LP + + ETP++Q + +S
Sbjct: 503 PVTSPAPSTSLPASSTLPVLPTSSLAETPSTQSVASS 539


>SB_42215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 639 LMDILPICHLETSQEDCYNYMIGVNVKFSLRLA---GKLHWT 755
           LM+   IC L   QE+C NYM  V V   +++A   GK+H T
Sbjct: 45  LMNKAIICSLAI-QEECDNYMTDVGVLLRVKIALSVGKMHIT 85


>SB_37230| Best HMM Match : PAZ (HMM E-Value=0.035)
          Length = 167

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 318 ISGWDVGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVF 449
           +  + + +    V  + +++ PP + YG K S P+ P  +T V+
Sbjct: 74  VKDFSISIGKNMVELQGRVLPPPKLVYGGKQSSPITPKGATDVY 117


>SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047)
          Length = 355

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 376 IIFLLPPTFIPETPTSQPLMTSFAPRRNLNPGPLRQLSN 260
           ++F L   + PE P + P ++S  PR +  PG    ++N
Sbjct: 123 VLFFLVWIYFPEKPPTPPSISSSKPRLDFIPGAKTLMTN 161


>SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)
          Length = 288

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 124 IEKKEKKALSGGVQIEDLKLGNGPVAKPGKV 216
           IEK+ K  LSGG  +  L+  +G   KPG+V
Sbjct: 59  IEKEMKALLSGGATVPWLRGRDGRDGKPGRV 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,342,563
Number of Sequences: 59808
Number of extensions: 444431
Number of successful extensions: 1132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)