Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20179
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   7.1  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   9.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.4  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 532 QRQATKDAGTISGLNVLRIINEPTAAAIAYG 624
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 691 VHPYHRGWYLRGEIHRRRHPLWE 759
           + PY +   L  E+ RR HP W+
Sbjct: 158 LQPYKK---LSVEVVRREHPFWD 177


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 601 TAAAIAYGLDKKGTGERNVLIFDSAAVLRRVHP 699
           +A   AYG  K GTG   + +     +++ + P
Sbjct: 25  SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIP 57


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 419 PEEVSSMVLTKMKETAEAYLGKTVQNAVITFPRTS 523
           P +   M+L  M+      +    QN+VI F + S
Sbjct: 466 PRKRCKMILESMEIERNGLIASQRQNSVIQFAKAS 500


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 78 PFCIFNQSCYLFLKQ 34
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,410
Number of Sequences: 438
Number of extensions: 5591
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)