Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20178
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    25   0.49 
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    25   0.49 
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   7.9  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   7.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   7.9  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   7.9  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   7.9  

>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 257 PLPYIINFKKNCRKWCRN 310
           PLP +++  KNC  +C N
Sbjct: 272 PLPIVLSIVKNCLSYCFN 289


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 257 PLPYIINFKKNCRKWCRN 310
           PLP +++  KNC  +C N
Sbjct: 272 PLPIVLSIVKNCLSYCFN 289


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 693 YNFSYYFTRKRKKEL 737
           ++F++Y TR+R+ E+
Sbjct: 25  FHFNHYLTRRRRIEI 39


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 549 PAKTGSDNNNKNAVSLQLIQIRVI 478
           PA+T  ++ N+N  +  L QIR I
Sbjct: 260 PAETSMNDANRNDCAKPLTQIRNI 283


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 549 PAKTGSDNNNKNAVSLQLIQIRVI 478
           PA+T  ++ N+N  +  L QIR I
Sbjct: 260 PAETSMNDANRNDCAKPLTQIRNI 283


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 693 YNFSYYFTRKRKKEL 737
           ++F++Y TR+R+ E+
Sbjct: 176 FHFNHYLTRRRRIEI 190


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 693 YNFSYYFTRKRKKEL 737
           ++F++Y TR+R+ E+
Sbjct: 235 FHFNHYLTRRRRIEI 249


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,295
Number of Sequences: 336
Number of extensions: 2440
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)