Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20178
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    73   4e-14
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    25   8.6  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = +2

Query: 545 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 667
           AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEV
Sbjct: 210 AGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEV 250



 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
 Frame = +1

Query: 16  SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 189
           SGIIG+    +IR EL  PGS  L G+ Q+YN  ++AH                  N LV
Sbjct: 31  SGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLV 90

Query: 190 PLILGAPDIAFPRINNIRF 246
           PL++GAPD+A+PR+NN  F
Sbjct: 91  PLMIGAPDVAYPRVNNFTF 109



 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 31/70 (44%), Positives = 36/70 (51%)
 Frame = +3

Query: 294 ENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSF 473
           E G G G TVYPPLSS  +H G ++DLAI SL L GISS                   S 
Sbjct: 126 EEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSL 185

Query: 474 DQLPLFV*AV 503
            Q+PLF  A+
Sbjct: 186 YQMPLFAWAI 195



 Score = 30.7 bits (66), Expect = 0.23
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +1

Query: 667 YILILPGFGIISHII 711
           YILI+P FG++SHII
Sbjct: 251 YILIMPAFGVVSHII 265


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 579 FRSVNNIVIAPAKTGSDNNNKNAVSLQL 496
           FRSV+  +  PA  G  N  +NA  +QL
Sbjct: 10  FRSVSRSIRIPASNGCINLGRNAYRVQL 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,445
Number of Sequences: 5004
Number of extensions: 39500
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)