Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20178
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61430.1 68414.m06922 S-locus protein kinase, putative simila...    29   3.2  
At1g61400.1 68414.m06919 S-locus protein kinase, putative simila...    29   3.2  
At3g07990.1 68416.m00976 serine carboxypeptidase S10 family prot...    28   7.5  
At1g61440.1 68414.m06923 S-locus protein kinase, putative contai...    28   7.5  
At1g18960.1 68414.m02359 myb family transcription factor contain...    27   9.9  

>At1g61430.1 68414.m06922 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 806

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 258 GEESKSYIIYSWECYIWC 205
           GEE K+ + Y+WEC  WC
Sbjct: 699 GEEGKALLAYAWEC--WC 714


>At1g61400.1 68414.m06919 S-locus protein kinase, putative similar
           to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 821

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 258 GEESKSYIIYSWECYIWC 205
           GEE K+ + Y+WEC  WC
Sbjct: 714 GEEGKTLLAYAWEC--WC 729


>At3g07990.1 68416.m00976 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II (CP-MII)
           GB:CAA70815 [Hordeum vulgare]
          Length = 459

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 618 TQFYINIYFDFLDILK-LYFNFTRIWY 695
           T+ Y N+YF+ LD+ K L+ N TR+ Y
Sbjct: 313 TERYSNVYFNRLDVQKALHANVTRLSY 339


>At1g61440.1 68414.m06923 S-locus protein kinase, putative contains
           similarity to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 792

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 258 GEESKSYIIYSWECYIWC 205
           GEE K+ + Y WEC  WC
Sbjct: 685 GEEGKALLAYVWEC--WC 700


>At1g18960.1 68414.m02359 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain;
           contains similarity to transcription factor GI:9759592
           from [Arabidopsis thaliana]
          Length = 307

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 403 IPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNIREGGGV 248
           +P K  E++    +  L   L E G    H    PFS +L E  NI  GG +
Sbjct: 89  LPGKTEEEVKMFWNTKLKKKLSEMG--IDHVTHRPFSHVLAEYGNINGGGNL 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,226,689
Number of Sequences: 28952
Number of extensions: 204181
Number of successful extensions: 428
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)