Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20177
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    29   0.54 
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    27   3.8  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    26   5.1  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    26   5.1  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   8.9  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 614  GCKPLP*SATLNDPLPFASNFFQHIATSHQPTYLNKTFK 730
            GC PLP  A   D  P     FQ +  +H   YL+K FK
Sbjct: 2286 GCAPLPIFALTADMQPTMETQFQEVGITH---YLSKPFK 2321


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 368 SRYNQCNQVQQCRNPTVLCIQGISFFHFNDE 276
           SRYN C   +   +P     +G  F  F DE
Sbjct: 208 SRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 148 GLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNRLIL 267
           G   S W ++  T + +F  I  +  L+D+P     RLI+
Sbjct: 520 GKYRSAWDLLSFTNLDLFCVISCIPKLKDIPKRVLQRLII 559


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 208 IRAVALLEDLPFDEKNRLILSKTSSL 285
           +  +A++  +PF+ +NR IL+ + +L
Sbjct: 464 VSGIAIISQIPFNRRNRFILTASMTL 489


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 602 LSTAGCKPLP*SATLNDPLPFASNFFQHIATSHQPTY 712
           L  AGCK +       D +PFAS+FF    T+  PT+
Sbjct: 169 LIKAGCKNV---VIRCDDIPFASDFFCSRETNMPPTW 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,262,999
Number of Sequences: 5004
Number of extensions: 68923
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)