Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20177
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)                   28   7.2  
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 28   9.5  
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)
          Length = 755

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 58  SIFSIKDFNYLAQKLYKMGCKLCGPKL 138
           +IF++KDF +  QKL +  CK   P L
Sbjct: 565 NIFTLKDFKFAWQKLSREFCKRMSPDL 591


>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 82  NYLAQKLYKMGCKLCGPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVAL 225
           NY+ +  Y  GCKL G  L++    LSV+ ++ +TL   +  + A+ L
Sbjct: 356 NYVRRWQYGAGCKLTG-FLAVFATELSVYTLVLITLERFYAIVYAMQL 402


>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 719  CLNKWADDLWQYAGKNWMRKVEDRSMWRTMGEVY 618
            C  KW D       +  +  VE ++MW  MG+++
Sbjct: 1376 CARKWLDSQQGQGEEFLINSVECKNMWMPMGDIF 1409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,389,295
Number of Sequences: 59808
Number of extensions: 469622
Number of successful extensions: 1142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)