Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20177
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical p...    57   1e-08
U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical pr...    37   0.018
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    32   0.51 
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    32   0.51 
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    32   0.51 
U41013-3|AAA82302.1|  433|Caenorhabditis elegans Protein kinase ...    29   4.7  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical
           protein F49C12.12 protein.
          Length = 95

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/44 (56%), Positives = 33/44 (75%)
 Frame = +1

Query: 115 CKLCGPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFD 246
           C L GPK+S   +V+SVWG+I L L+GVF+YI+AV L  DL F+
Sbjct: 5   CPLMGPKMSAFCMVMSVWGVIFLGLLGVFFYIQAVTLFPDLHFE 48



 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 288 VEKGYTLNAQNCWIAALLYLITLVVSGHQFWLNNRSSVSM 407
           ++  Y   A  CWIAA LY +TL+     FW N  ++  +
Sbjct: 58  IDAKYNEKATQCWIAAGLYAVTLIA---VFWQNKYNTAQI 94


>U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical
           protein C46G7.1 protein.
          Length = 93

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 127 GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEK 252
           GP  +   L L++WG + + ++G  +Y ++V L EDLP + K
Sbjct: 3   GPMCTGIFLFLALWGTVFMAILGGLFYNQSVGLFEDLPKESK 44


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 431 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTVLCIQGISFFHFNDEVFD 267
           ++TTP++LHT    I+    + RYN   + +Q R N   +  Q I + +   E+ D
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLD 594


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 431 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTVLCIQGISFFHFNDEVFD 267
           ++TTP++LHT    I+    + RYN   + +Q R N   +  Q I + +   E+ D
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLD 594


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 431 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTVLCIQGISFFHFNDEVFD 267
           ++TTP++LHT    I+    + RYN   + +Q R N   +  Q I + +   E+ D
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLD 594


>U41013-3|AAA82302.1|  433|Caenorhabditis elegans Protein kinase
           protein 26 protein.
          Length = 433

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 229 EDLPFDEKNRLILSKTSSLKWKKDIP*MHKTVGLRHC 339
           EDL  D+K  +IL     L++    P +H+ +  R+C
Sbjct: 226 EDLSVDKKTEMILQAAWGLEYIHGKPMLHRDIAARNC 262


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +1

Query: 319 TVGLRHCCT*LHWLYLDINFG*IIVPQLVCNIEGVVIFAVNSIPL*NCFFFCQKQVAICN 498
           T+ L HC     WL + + +    V  +   + G  +F  +S P    F  CQ+ +AI  
Sbjct: 175 TITLTHC-----WLIIGLIWIISTVTSVFVGMWGATLFYPDSAPFTCSFESCQQPLAIVI 229

Query: 499 YVCIKLCF 522
            + + +C+
Sbjct: 230 VIMLSICY 237


>Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical
           protein W01D2.3 protein.
          Length = 243

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 258 PHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVV 362
           PHS E    E+E+ +    ++C+  AL  L+TLV+
Sbjct: 81  PHSYELLFREIERVFGRRREHCFYGALGVLLTLVL 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,839,281
Number of Sequences: 27780
Number of extensions: 379071
Number of successful extensions: 902
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)