Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20177
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR ...    31   1.1  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    28   5.9  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    28   5.9  
At4g27920.1 68417.m04007 expressed protein various predicted pro...    28   5.9  
At2g27520.1 68415.m03329 F-box family protein contains Pfam prof...    28   5.9  

>At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 847

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 55  WSIFSIKDFNYLAQKLYKMGCKLCGPKLSLCGLVLSVW 168
           WS   +KD N     L+ +  K  G +L LC L LSV+
Sbjct: 383 WSSLRVKDDNIHVSSLFDLSFKDMGHELKLCFLYLSVF 420


>At5g45050.2 68418.m05524 disease resistance protein-related similar
           to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
           profiles PF03106: WRKY DNA -binding domain, PF00931:
           NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 580 HHHRQPVSLHCWM*TSPIVRHIERSSTF 663
           H HR+ ++LHCW     + + +ER  TF
Sbjct: 916 HSHRREINLHCW----ALGKAVERDHTF 939


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 580  HHHRQPVSLHCWM*TSPIVRHIERSSTF 663
            H HR+ ++LHCW     + + +ER  TF
Sbjct: 944  HSHRREINLHCW----ALGKAVERDHTF 967


>At4g27920.1 68417.m04007 expressed protein various predicted
           proteins
          Length = 183

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +3

Query: 102 VQNGLQ-TMWTKIVALWPSFER-MGHHSVDVDGRLLLYSSCRSAGRSTI**EKPPHSIED 275
           +++GL  T  T+++ +    E  +G   V  D RL  YSS  S    TI  +    +IE 
Sbjct: 79  LKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIES 138

Query: 276 FVIEVEKGYTLNAQNCWIAALL 341
           FV++V +G T      ++ AL+
Sbjct: 139 FVVDVPEGNTKEETCFFVEALI 160


>At2g27520.1 68415.m03329 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 347

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = -3

Query: 752 ISKDFKII*KFCLNKWADDLWQYAGKNWMRKV---EDRS-MWR 636
           I +D K+I   C ++W +++    GKN  +K+   +DRS +WR
Sbjct: 287 IEEDKKVIVVDCDDRWKENMIYIVGKNGFKKLSYEKDRSNLWR 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,612,366
Number of Sequences: 28952
Number of extensions: 342562
Number of successful extensions: 711
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)