Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20175
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    77   3e-15
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    27   1.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.7  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   7.6  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.6  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   7.6  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   10.0 

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 33/56 (58%), Positives = 43/56 (76%)
 Frame = +3

Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 407
           L +  +WP+YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET
Sbjct: 46  LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101



 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
 Frame = +1

Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGPSISASSARRLYFSVV*KCPLR----STNLP 342
           NPLF  RP++F IGQ IQP RDLSRFV  P       RR   ++  K P         L 
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 343 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQHSHQ 522
           ++      +  +++   T                       +S  ++         H   
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS--KKPYNVKYGLNHVVA 141

Query: 523 AGREEEGALVVIAHDVDPIELVLFLPAL 606
               ++  LV+IA DVDPIELV+FLPAL
Sbjct: 142 LIEAKKAKLVLIASDVDPIELVVFLPAL 169



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +2

Query: 509 NTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYCRKMGVPYCIVKGKSRL---VHLYTA 676
           N V  L+E KKA L      + P+         C+KMGVPY IVK K+RL   +H  TA
Sbjct: 137 NHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTA 195


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = -2

Query: 327 SEGALSDDAEVQPSG------AGCGYTWAIYKSGQVPSWLNALTNGKVLWPLLEERIHDL 166
           S+  L D     PSG      AG G+  AI+ +GQ+  + N  ++ KV+ PL+   I   
Sbjct: 147 SDKVLQDGFRSFPSGHTSFSFAGLGFL-AIFLAGQLKMFRNKTSSWKVVVPLVPLSIASW 205

Query: 165 LGLN 154
           +GL+
Sbjct: 206 IGLS 209


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 288 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 389
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 272 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 361
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 470 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 300
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 658 EAGLALDNAVWYAHFTAITLAGREPAQWDQHHER 557
           E+G  L+   WY  F+    AG+E  + D +H R
Sbjct: 597 ESGALLNLYDWYIAFSEHLQAGKENLKEDDNHPR 630


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 360 TAKGLFKILEKYR 398
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,003
Number of Sequences: 5004
Number of extensions: 48048
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)