Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20175
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 79 3e-15
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 79 3e-15
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 62 4e-10
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.84
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 31 1.1
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896... 28 5.9
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 5.9
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/55 (61%), Positives = 44/55 (80%)
Frame = +3
Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 404
L + +WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
Score = 58.4 bits (135), Expect = 5e-09
Identities = 44/145 (30%), Positives = 57/145 (39%), Gaps = 1/145 (0%)
Frame = +1
Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 354
NPLFEKRPK F IG + P +DL RFV P + +R K P R
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 355 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQHSHQAGR 531
+ L F + + ++ H
Sbjct: 82 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLNHVTYLIE 140
Query: 532 EEEGALVVIAHDVDPIELVLFLPAL 606
+ + LVVIAHDVDPIELV++LPAL
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPAL 165
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 509 NTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYCRKMGVPYCIVKGKSRL---VHLYTA 676
N VT L+E+ KA L + P+ CRKM VPYCIVKGK+RL VH TA
Sbjct: 133 NHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTA 191
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/55 (61%), Positives = 44/55 (80%)
Frame = +3
Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 404
L + +WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
Score = 58.4 bits (135), Expect = 5e-09
Identities = 44/145 (30%), Positives = 57/145 (39%), Gaps = 1/145 (0%)
Frame = +1
Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 354
NPLFEKRPK F IG + P +DL RFV P + +R K P R
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 355 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQHSHQAGR 531
+ L F + + ++ H
Sbjct: 66 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLNHVTYLIE 124
Query: 532 EEEGALVVIAHDVDPIELVLFLPAL 606
+ + LVVIAHDVDPIELV++LPAL
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPAL 149
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/55 (50%), Positives = 40/55 (72%)
Frame = +3
Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 404
L + RWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 45 LHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/30 (63%), Positives = 21/30 (70%)
Frame = +1
Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 264
NPLFEKRPK F IG + P +DL RFV P
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWP 52
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +2
Query: 515 VTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYCRKMGVPYCIVKGKSRL---VHLYTA 676
VT L+E+ KA L + P+ CRKM +PYCIVKGK+RL VH TA
Sbjct: 120 VTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTA 176
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +1
Query: 532 EEEGALVVIAHDVDPIELVLFLPAL 606
+ + LVVIAHDVDPIELV++LPAL
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPAL 150
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 272 PHPAPEGCTSASSESAPSDQP 334
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 479 KEAQHHPIRHNTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRY 607
+EA H ++ + K VE+ K +S + L+ L W ++C RY
Sbjct: 343 QEADHLRQENDKLAKEVEQLKTDRFSDVEELVYLKWINACLRY 385
>09_04_0300 -
16488358-16488447,16488684-16489116,16489377-16489642,
16490015-16490044,16490282-16490606,16491752-16492035,
16492154-16492376,16493117-16493173,16494454-16494947
Length = 733
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 512 CCAGSDGVGPLWWRLIFLGNLSFSSFPQ 429
CC V WW L+FL N +SFPQ
Sbjct: 70 CCWLVGCVCSAWWLLLFLYNAMPASFPQ 97
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 220 PDQWQSSLASSRREDSRSSWAQPF*PPMGRR 128
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,245,176
Number of Sequences: 37544
Number of extensions: 370865
Number of successful extensions: 1292
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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