Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20175
         (676 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal prot...    99   6e-21
AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p pro...    99   6e-21
AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,...    99   6e-21
AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,...    99   6e-21
AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,...    99   6e-21
AY058343-1|AAL13572.1|  403|Drosophila melanogaster GH11867p pro...    31   1.1  
AE014297-1960|AAN13634.1|  403|Drosophila melanogaster CG31344-P...    31   1.1  
AE014297-2769|AAF55745.3| 1314|Drosophila melanogaster CG34139-P...    29   4.4  

>X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal protein
           L7a protein.
          Length = 271

 Score = 98.7 bits (235), Expect = 6e-21
 Identities = 44/56 (78%), Positives = 51/56 (91%)
 Frame = +3

Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 407
           L +  RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPES 111



 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 30/53 (56%), Positives = 34/53 (64%)
 Frame = +2

Query: 509 NTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYCRKMGVPYCIVKGKSRLVHL 667
           NTVTKL+E+KKA L      + PL         CRKMGVPYCIVKGK+RL  L
Sbjct: 146 NTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRL 198



 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = +1

Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 264
           N LFEKRPKNF IGQ +QP RDLSRFV  P
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63


>AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p
           protein.
          Length = 271

 Score = 98.7 bits (235), Expect = 6e-21
 Identities = 44/56 (78%), Positives = 51/56 (91%)
 Frame = +3

Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 407
           L +  RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPES 111



 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 30/53 (56%), Positives = 34/53 (64%)
 Frame = +2

Query: 509 NTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYCRKMGVPYCIVKGKSRLVHL 667
           NTVTKL+E+KKA L      + PL         CRKMGVPYCIVKGK+RL  L
Sbjct: 146 NTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRL 198



 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = +1

Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 264
           N LFEKRPKNF IGQ +QP RDLSRFV  P
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63


>AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,
           isoform D protein.
          Length = 271

 Score = 98.7 bits (235), Expect = 6e-21
 Identities = 44/56 (78%), Positives = 51/56 (91%)
 Frame = +3

Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 407
           L +  RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPES 111



 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 30/53 (56%), Positives = 34/53 (64%)
 Frame = +2

Query: 509 NTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYCRKMGVPYCIVKGKSRLVHL 667
           NTVTKL+E+KKA L      + PL         CRKMGVPYCIVKGK+RL  L
Sbjct: 146 NTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRL 198



 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = +1

Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 264
           N LFEKRPKNF IGQ +QP RDLSRFV  P
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63


>AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,
           isoform C protein.
          Length = 271

 Score = 98.7 bits (235), Expect = 6e-21
 Identities = 44/56 (78%), Positives = 51/56 (91%)
 Frame = +3

Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 407
           L +  RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPES 111



 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 30/53 (56%), Positives = 34/53 (64%)
 Frame = +2

Query: 509 NTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYCRKMGVPYCIVKGKSRLVHL 667
           NTVTKL+E+KKA L      + PL         CRKMGVPYCIVKGK+RL  L
Sbjct: 146 NTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRL 198



 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = +1

Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 264
           N LFEKRPKNF IGQ +QP RDLSRFV  P
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63


>AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,
           isoform A protein.
          Length = 271

 Score = 98.7 bits (235), Expect = 6e-21
 Identities = 44/56 (78%), Positives = 51/56 (91%)
 Frame = +3

Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 407
           L +  RWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPES 111



 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 30/53 (56%), Positives = 34/53 (64%)
 Frame = +2

Query: 509 NTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYCRKMGVPYCIVKGKSRLVHL 667
           NTVTKL+E+KKA L      + PL         CRKMGVPYCIVKGK+RL  L
Sbjct: 146 NTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRL 198



 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = +1

Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 264
           N LFEKRPKNF IGQ +QP RDLSRFV  P
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63


>AY058343-1|AAL13572.1|  403|Drosophila melanogaster GH11867p
           protein.
          Length = 403

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = -1

Query: 295 TAFWRWMRIYLGHLQIWTSPELAECPDQWQSSLASSRREDSRSSWA 158
           TA+ R++R    H Q W +  +A+   ++ +S+A+ RR  SRSS A
Sbjct: 130 TAYRRYVRTIF-HTQAWYNHNIADRGSRFWTSIAAVRRAHSRSSHA 174


>AE014297-1960|AAN13634.1|  403|Drosophila melanogaster CG31344-PA
           protein.
          Length = 403

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = -1

Query: 295 TAFWRWMRIYLGHLQIWTSPELAECPDQWQSSLASSRREDSRSSWA 158
           TA+ R++R    H Q W +  +A+   ++ +S+A+ RR  SRSS A
Sbjct: 130 TAYRRYVRTIF-HTQAWYNHNIADRGSRFWTSIAAVRRAHSRSSHA 174


>AE014297-2769|AAF55745.3| 1314|Drosophila melanogaster CG34139-PA
           protein.
          Length = 1314

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 469 SLHQRGPTPSDPAQHSH-QAGREEEGALVVI 558
           SLHQ+ P P +P +H+H   G  +  A V++
Sbjct: 901 SLHQQVPYPPEPIKHAHYHMGHSQSSANVIV 931


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,325,222
Number of Sequences: 53049
Number of extensions: 574375
Number of successful extensions: 2163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2158
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)