Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20175
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 85 6e-17
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 80 1e-15
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 80 2e-15
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 59 2e-09
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.026
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 29 4.0
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 29 4.0
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu... 28 5.3
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 28 5.3
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 7.0
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ... 27 9.2
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 84.6 bits (200), Expect = 6e-17
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = +3
Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 419
+ + +WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAK 111
Query: 420 XXXXXXXXXXXXXXXXXXXXXRPNTIRSG 506
RPNT+R G
Sbjct: 112 KNRLRARAEARAAGKKEEVTKRPNTVRHG 140
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +1
Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 264
NPLFEKR +NF IGQ IQP +D++RFV P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 500 IRH--NTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYCRKMGVPYCIVKGKSRL 658
+RH NT+T+LVE ++A L + PL CRK VPY I+KGK+ L
Sbjct: 137 VRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASL 191
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 80.2 bits (189), Expect = 1e-15
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +3
Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 407
+ + +WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +1
Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 264
NPLFEKR +NF IGQ IQP +D++RFV P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 500 IRH--NTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYCRKMGVPYCIVKGKSRL 658
+RH NT+T+LVE ++A L + PL CRK VPY I+KGK+ L
Sbjct: 117 VRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASL 171
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +3
Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 407
+ + +WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +1
Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 264
NPLFEKR +NF IGQ IQP +D++RFV P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +3
Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 353
+ + +WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +1
Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 264
NPLFEKR +NF IGQ IQP +D++RFV P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -3
Query: 449 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 330
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 487 PTPSDPAQHSHQAGREEEGALVVIAHDVDPIELVLFLP 600
P+PS+P S + E +++ AHD DP++ + P
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAP 489
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 487 PTPSDPAQHSHQAGREEEGALVVIAHDVDPIELVLFLP 600
P+PS+P S + E +++ AHD DP++ + P
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAP 489
>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform a
protein.
Length = 1081
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +2
Query: 200 RTLPLVRAFSQLGTCPDL*MAQVY-PHPAPEGCTSASSESAPSDQP 334
+T P+ R S DL A VY P P PEG T QP
Sbjct: 66 KTEPVARQVSTAQMKRDLEQAAVYVPTPIPEGSTQPQQRQQQQSQP 111
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +2
Query: 200 RTLPLVRAFSQLGTCPDL*MAQVY-PHPAPEGCTSASSESAPSDQP 334
+T P+ R S DL A VY P P PEG T QP
Sbjct: 66 KTEPVARQVSTAQMKRDLEQAAVYVPTPIPEGSTQPQQRQQQQSQP 111
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 322 LRSTNLPRHWTRLQLRA 372
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
protein Y54E10A.11 protein.
Length = 1446
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +3
Query: 165 EDRESSLREEAKELCHWSGHSANSGLVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQ 344
+ RE L+E EL + S S C + V +KV I+QF
Sbjct: 71 QTREKGLKE-LMELINTENSSIESSYEHFCGLVAQLTTDGSPTVRMLTMKV---ISQFLT 126
Query: 345 TLDKTTAKGLFKIL 386
L K+ +KGL KI+
Sbjct: 127 KLKKSASKGLKKII 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,601,594
Number of Sequences: 27780
Number of extensions: 281086
Number of successful extensions: 823
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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