Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20174
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   109   2e-25
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   109   2e-25
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    31   0.17 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.53 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.71 
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   1.6  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    26   3.8  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    26   3.8  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    26   5.0  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   5.0  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   5.0  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   6.6  
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    25   8.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.7  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    25   8.7  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  109 bits (263), Expect = 2e-25
 Identities = 47/66 (71%), Positives = 61/66 (92%)
 Frame = +1

Query: 64  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 243
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 244 ARVRKT 261
            R+RKT
Sbjct: 61  FRIRKT 66



 Score = 92.7 bits (220), Expect = 4e-20
 Identities = 42/84 (50%), Positives = 54/84 (64%)
 Frame = +3

Query: 255 KNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLY 434
           K   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLYH+LY
Sbjct: 65  KTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLY 124

Query: 435 MKAKGNVFKNKRVLMEYIHRKKAE 506
           ++AKGN FK+KR L+E+I R KAE
Sbjct: 125 LEAKGNTFKHKRALIEHIQRAKAE 148



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 485 HPQEEG*EA-RTKMLSDQAEARRNKVKEARNRRKERIAAKKE 607
           H Q    EA RTK++ +Q +ARR + K AR RR + +  K+E
Sbjct: 141 HIQRAKAEANRTKLIQEQQDARRARAKAARQRRAKAVEEKRE 182


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  109 bits (263), Expect = 2e-25
 Identities = 47/66 (71%), Positives = 61/66 (92%)
 Frame = +1

Query: 64  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 243
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 244 ARVRKT 261
            R+RKT
Sbjct: 61  FRIRKT 66



 Score = 92.7 bits (220), Expect = 4e-20
 Identities = 42/84 (50%), Positives = 54/84 (64%)
 Frame = +3

Query: 255 KNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLY 434
           K   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLYH+LY
Sbjct: 65  KTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLY 124

Query: 435 MKAKGNVFKNKRVLMEYIHRKKAE 506
           ++AKGN FK+KR L+E+I R KAE
Sbjct: 125 LEAKGNTFKHKRALIEHIQRAKAE 148



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 485 HPQEEG*EA-RTKMLSDQAEARRNKVKEARNRRKERIAAKKE 607
           H Q    EA RTK++ +Q +ARR + K AR RR + +  K+E
Sbjct: 141 HIQRAKAEANRTKLIQEQQDARRARAKAARQRRAKAVEEKRE 182


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +2

Query: 509 ARTKMLSDQAEARRNKVKEARNRRKERIAAKKE 607
           AR   + ++A +++ +VKE RN R+E+  +KKE
Sbjct: 509 ARPAKIKNEAWSKQKEVKEKRNTRREKRKSKKE 541


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 207 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 118
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 186 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 91
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -2

Query: 562 LHFIAAGLSLVAKHLRPGFSAFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 410
           ++ +   L L   +L     AF LW+YS+   L+L       +    W++CL
Sbjct: 317 VNILGDNLILSGIYLTSSRQAFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 34  LVCVGSH-RVRMSSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 192
           +V VG +  ++ S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 305 IVLVGKYTHLQDSYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 46  GSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 159
           G  +++    K  K L +S+        W D NE+NE+
Sbjct: 9   GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 541 LSLVAKHLRPGFSAFFLWMYSMSTRLFLNTL 449
           LS VA  LR GF+ F    Y+ + R+  NTL
Sbjct: 611 LSSVAVALRDGFAPFAAETYARTFRILRNTL 641


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
 Frame = -3

Query: 318 WLYLFSYQSHSDDPFYVLLCFSDTSAGVYCYRFLDDETILDHLTDVLSGVGVCDLIDFIW 139
           W YL     +++    V++ FSD     Y YRF+D      H    ++  G     +F +
Sbjct: 168 WDYL---SQNAESIHQVMILFSDLGGTPYSYRFMDG--FSSHTYKFVNDKG-----EFYY 217

Query: 138 IQPHLLFTTSHNRGC--KPLLQLEGTHPDTVRSN 43
            + H + T    +G   +    L+G++PD  R +
Sbjct: 218 CKWHFI-TNQGTKGLTNEEAAALDGSNPDHARQD 250


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = +1

Query: 235 HSRARVR-----KTQKHVERVVTVALVREEVQPMRVCHRR 339
           H++AR+      K  K  E+++  AL RE V+P R  H++
Sbjct: 645 HAKARLSSVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 513 LASQPSSCGCTP*AHACS*THYPSPSCRVSGIDACQSS 400
           L S+ S+  C+P    C   +Y  P+C V G     S+
Sbjct: 17  LVSKTSASQCSPRYGTCGGIYYDGPTCCVVGSSCIYSN 54


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 208  LVIKKPVAVHSRARVRKTQKHVERVVTVALVREEVQPMRVCHRRNYGYKD 357
            L ++ PV +HS     +TQ  + +  T      +V    VCH++   Y D
Sbjct: 852  LKVEFPVDIHSEFASYETQFGITKRPTHYNTSWDVAKFEVCHQKFADYSD 901


>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 544 GLSLVAKHLRPGFSAFFLWMYSMSTRLFLNTLPFAF 437
           GL L A  L  GF A    +Y M+ +  L   P+AF
Sbjct: 335 GLKLSAMTLGLGFGAVVASLYGMNLQNGLENHPYAF 370


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 535  LVAKHLRPGFSAFFLWMYSMSTRLFLNTLPFA 440
            LV +H RP F  FFL  Y+   + F     +A
Sbjct: 2582 LVCRHYRPVFRHFFLESYADPVQWFTTQTNYA 2613


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 387 TSGAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHS 286
           +SG + LKP   +   P   +  W+  F  +SHS
Sbjct: 193 SSGGLLLKPAGRIGSSPIPGHGFWIESFDNKSHS 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,204
Number of Sequences: 5004
Number of extensions: 57577
Number of successful extensions: 188
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)