Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20174
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 109 2e-24
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 109 2e-24
11_04_0443 - 17808897-17809110,17809169-17813652 31 0.55
11_06_0640 + 25744048-25745021,25745128-25745273,25747870-257479... 31 0.96
04_03_0266 + 13648287-13649099,13649186-13649524 29 2.2
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 29 2.2
07_03_1639 + 28305801-28305958,28306240-28306249 29 2.9
11_03_0085 - 9717360-9717390,9717478-9717603,9718600-9718666,971... 29 3.9
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 29 3.9
04_03_0227 + 12979635-12980363,12980439-12980474,12980604-129808... 29 3.9
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 28 5.1
09_06_0281 + 22014394-22015534,22016041-22017056 28 5.1
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 28 6.8
05_07_0189 + 28277387-28277643,28277777-28277819 28 6.8
04_04_0766 - 27923120-27923554,27923843-27924580,27924815-279248... 28 6.8
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661... 28 6.8
02_02_0353 + 9276316-9276518,9276915-9277314 28 6.8
01_05_0283 - 20354065-20354154,20354579-20354890,20355566-203557... 28 6.8
12_01_0476 + 3738526-3738567,3738695-3738739,3739240-3739601,373... 27 8.9
11_04_0216 - 14954047-14956098 27 8.9
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 27 8.9
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 27 8.9
02_05_0067 + 25557975-25558553 27 8.9
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 109 bits (261), Expect = 2e-24
Identities = 50/98 (51%), Positives = 62/98 (63%)
Frame = +3
Query: 264 EARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKA 443
EA++KGRH G+GKRRGT AR+P K LW AKKID+H+YH +YMK
Sbjct: 68 EAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKV 127
Query: 444 KGNVFKNKRVLMEYIHRKKAEKPGRRCLATRLRPAAIK 557
KGN+FKNKRVLME IH+ KAEK + L+ + K
Sbjct: 128 KGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
Score = 107 bits (256), Expect = 9e-24
Identities = 46/68 (67%), Positives = 58/68 (85%)
Frame = +1
Query: 64 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 243
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 244 ARVRKTQK 267
+R R+ +
Sbjct: 61 SRARRAHE 68
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 109 bits (261), Expect = 2e-24
Identities = 50/98 (51%), Positives = 62/98 (63%)
Frame = +3
Query: 264 EARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKA 443
EA++KGRH G+GKRRGT AR+P K LW AKKID+H+YH +YMK
Sbjct: 68 EAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKV 127
Query: 444 KGNVFKNKRVLMEYIHRKKAEKPGRRCLATRLRPAAIK 557
KGN+FKNKRVLME IH+ KAEK + L+ + K
Sbjct: 128 KGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
Score = 108 bits (259), Expect = 4e-24
Identities = 47/68 (69%), Positives = 58/68 (85%)
Frame = +1
Query: 64 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 243
M SLKLQKRLAASV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 244 ARVRKTQK 267
+R R+ +
Sbjct: 61 SRARRAHE 68
>11_04_0443 - 17808897-17809110,17809169-17813652
Length = 1565
Score = 31.5 bits (68), Expect = 0.55
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 15 AAILILSCVRWISPCQD 65
A +LIL CVR++SPC D
Sbjct: 882 ATVLILKCVRYVSPCDD 898
>11_06_0640 +
25744048-25745021,25745128-25745273,25747870-25747945,
25747996-25748230
Length = 476
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -3
Query: 357 VFVPIVPSVAYAHWLYLFSYQSHSDDPFYVLLCFSDTSAGVYCYRFLDDETILDHL 190
+ + ++ AY W+ L+ Y + DD F V D S + Y F + HL
Sbjct: 200 ISITLLFPTAYVSWMILWPYATTDDDGFRVEDVLRDLSYTILAYLFFATTLVTRHL 255
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 118 KKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKTQKH 270
K+K+ L +E ++ T R+ RK+ K + KK + H ++RK+ ++
Sbjct: 320 KRKLVLSDDEGDDAEKTRDRETTRKLPKQA-IPKKKTSSHPMPKIRKSSRY 369
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 183 VLSGVGVCDLIDFIWIQPHLLFTTSHNRGCKPLLQLEGTHPDTV 52
VL G D D WI PH T +R C +L LEG DT+
Sbjct: 519 VLDQEGWFDTGDIGWIAPHC--PTGPSRKCGGMLVLEGRAKDTI 560
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 476 HGVHPQEEG*EARTKMLSDQAEARRNKVKEARNRRKER 589
+G +PQ + +AR + LSDQ EA+ K ++ R+ R
Sbjct: 15 YGEYPQVQAEKARKRTLSDQFEAKLAKSMASQERKISR 52
>11_03_0085 -
9717360-9717390,9717478-9717603,9718600-9718666,
9718770-9718831,9718904-9719094,9720133-9720268,
9720760-9720851,9721231-9721413
Length = 295
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 537 AWSLSIFVLAS-QPSSCGCTP*AHACS*THYPSPSCRVSGIDA 412
A+ +F+L S PS C P ACS + PS S RV+ + A
Sbjct: 7 AFRRRLFLLRSLSPSPCAALPGNAACSSSPSPSTSIRVNAMSA 49
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 133 LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKTQK-HVERVVTVALVREE 309
LDP +NE N R NI IKD L ++ +H ++ T+K + ++REE
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLH-YVCLQSTEKISTIPEINFDIIREE 686
Query: 310 V 312
+
Sbjct: 687 I 687
>04_03_0227 +
12979635-12980363,12980439-12980474,12980604-12980873,
12980962-12981099,12981347-12981795,12981885-12982055,
12982136-12982370
Length = 675
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +1
Query: 52 HRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK 222
+RVR L K V R LDP +NE N R N+ IKD L ++
Sbjct: 530 YRVRAIDTNLLKLTWKHVHRKAPHVALLDPAVVNETTLKNDRANMMGYIKDCLFARQ 586
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 491 QEEG*EARTKMLSDQAEARRNKVKEARNRRKERIAAKKED 610
+EE E R + ++ E RR K +E + RRKER+ K+++
Sbjct: 513 EEEEKEKREE--EERRERRRTKEREKKLRRKERLKEKEKE 550
>09_06_0281 + 22014394-22015534,22016041-22017056
Length = 718
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 276 FYVLLCFSDTSAGVYCYRFLDDETILDHLTDVLSGVGVCDLID 148
F V+L T Y YR DDE+++ H T +L+ + D++D
Sbjct: 643 FGVVLIELLTRKKPYSYRSPDDESLVTHFTALLTQGNLGDILD 685
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 491 QEEG*EARTKMLSDQAEARRNKVKEARNRRKERIAAK 601
+EE E + L+ Q E K+KE RRKE I AK
Sbjct: 419 EEEYQEKIEQQLAMQEEEDPEKIKEEARRRKEAIMAK 455
>05_07_0189 + 28277387-28277643,28277777-28277819
Length = 99
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 527 SDQAEARRNKVKEARNRRKERIAAKK 604
+D+A ARR KE R R+K AA++
Sbjct: 50 ADRAPARRTAAKEQRRRKKAAAAARR 75
>04_04_0766 -
27923120-27923554,27923843-27924580,27924815-27924874,
27925281-27925328
Length = 426
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 210 RHQETCSSTLPRSCPKNTEARRKGRHCGFGKRRGTANARMPQKEL 344
R +E SS+ P CP T +RRK R K A + P E+
Sbjct: 302 RVEELESSSQPSPCPLETRSRRKCREITGKKVSAGAKRKAPAPEV 346
>03_02_0232 +
6614784-6614882,6616145-6616477,6616708-6616967,
6617328-6617469,6617567-6617938,6618056-6618187,
6618907-6619035,6619125-6621188
Length = 1176
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 545 RRNKVKEARNRRKERIAAKKED 610
RR K +E ++RRKER+ K+ D
Sbjct: 510 RRTKEREKKHRRKERLKEKERD 531
>02_02_0353 + 9276316-9276518,9276915-9277314
Length = 200
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 174 QTEHP*DDQGWSRHQETCSSTLPRSCPKNTEARRKGRHCGFGKRRG 311
Q E DD+ SRH+ P S P+ + A GR C G+R G
Sbjct: 149 QAEGLVDDRSRSRHRRRRRRWCPSSSPRRSPAPPPGRACK-GRRGG 193
>01_05_0283 -
20354065-20354154,20354579-20354890,20355566-20355763,
20356371-20356754,20357445-20357858,20359771-20360022
Length = 549
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 518 KMLSDQAEARRNKVKEARNRRKERIAAKKEDC 613
K+ +D +E R +++ R RRK+R A +++C
Sbjct: 142 KVPADVSEKIREHLRKKRERRKKRAAQNRDNC 173
>12_01_0476 +
3738526-3738567,3738695-3738739,3739240-3739601,
3739691-3740057,3740490-3740555,3741630-3741743
Length = 331
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 88 RLAASVMRCGKKKVWLDPNEINEIA--NTNSRQNIRKMIKDGLV 213
R A RC + LDPNEI ++ SR+ + +++ G++
Sbjct: 236 RFALHCRRCERDATPLDPNEIKHVSPYGITSREQVLEVVARGIL 279
>11_04_0216 - 14954047-14956098
Length = 683
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 455 VQEQACAHGVHPQEEG*EARTKM-LSDQAEARRNKVKEARNRRKER 589
+QEQ C +GV P+EE +M L + + + + K+A ++ R
Sbjct: 459 LQEQDCDNGVQPEEEEESQEHEMRLQESHDDQEEEFKDAADQESPR 504
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 169 NSRQNIRKMI-KDGLVIKKPVAVH-SRARVRKTQKHVERVVTVALVREEVQPMR 324
+S Q IRK + K L +P+ R K VE + T+ +EEVQP +
Sbjct: 522 SSDQKIRKAVRKQPLKATEPINTQPDREESNKDALFVEPICTIPAKKEEVQPTK 575
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 488 PQEEG*EARTKMLSDQAEARRNKVKEARNRRKERIAAKKED 610
PQ++ + TK + E +V E RKER AA +E+
Sbjct: 373 PQQQQHQPETKAREPEPEPEPMEVTEEEKERKERKAAAQEE 413
>02_05_0067 + 25557975-25558553
Length = 192
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 471 HACS*THYPSPSCRVSGIDACQSSW 397
H C H P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,816,326
Number of Sequences: 37544
Number of extensions: 417877
Number of successful extensions: 1188
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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