Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20174
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   110   9e-25
Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical pr...    31   0.49 
Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical p...    31   0.49 
AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin ...    31   0.49 
AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like ...    31   0.49 
Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    29   2.0  
U14524-1|AAA50785.1|  461|Caenorhabditis elegans avermectin-sens...    29   2.0  
AF024500-5|AAB70362.1|  288|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    29   2.6  
U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical...    28   4.6  
AL132948-28|CAD31828.1|  263|Caenorhabditis elegans Hypothetical...    28   6.1  
U28730-7|AAA68258.2|  665|Caenorhabditis elegans Abnormal cell l...    27   8.1  
AF275253-1|AAG28037.1|  665|Caenorhabditis elegans LIN-23 protein.     27   8.1  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  110 bits (264), Expect = 9e-25
 Identities = 51/89 (57%), Positives = 61/89 (68%)
 Frame = +3

Query: 264 EARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKA 443
           EARRKGRH G+GKRRGTANARMP+K LW                AKK+D+HLYH LY++A
Sbjct: 68  EARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRA 127

Query: 444 KGNVFKNKRVLMEYIHRKKAEKPGRRCLA 530
           KGN FKNK+ L+EYI +KK E    + LA
Sbjct: 128 KGNNFKNKKNLIEYIFKKKTENKRAKQLA 156



 Score =  100 bits (240), Expect = 7e-22
 Identities = 41/68 (60%), Positives = 60/68 (88%)
 Frame = +1

Query: 64  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 243
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 244 ARVRKTQK 267
            R R+ ++
Sbjct: 61  FRAREYEE 68



 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 18/33 (54%), Positives = 25/33 (75%)
 Frame = +2

Query: 512 RTKMLSDQAEARRNKVKEARNRRKERIAAKKED 610
           R K L+DQA+ARR+K KE+R RR+ER   K+ +
Sbjct: 151 RAKQLADQAQARRDKNKESRKRREERQVVKRAE 183


>Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 518 KMLSDQAEARRNKVKEARNRRKERIAAKKEDC 613
           K  SD+AEA R + +E  N  K R +A  E C
Sbjct: 790 KSFSDEAEATRGEAREFSNTLKSRFSATSEKC 821


>Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 518 KMLSDQAEARRNKVKEARNRRKERIAAKKEDC 613
           K  SD+AEA R + +E  N  K R +A  E C
Sbjct: 790 KSFSDEAEATRGEAREFSNTLKSRFSATSEKC 821


>AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin
           BMK-1 protein.
          Length = 958

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 518 KMLSDQAEARRNKVKEARNRRKERIAAKKEDC 613
           K  SD+AEA R + +E  N  K R +A  E C
Sbjct: 790 KSFSDEAEATRGEAREFSNTLKSRFSATSEKC 821


>AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like
           protein KLP-14 protein.
          Length = 958

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 518 KMLSDQAEARRNKVKEARNRRKERIAAKKEDC 613
           K  SD+AEA R + +E  N  K R +A  E C
Sbjct: 790 KSFSDEAEATRGEAREFSNTLKSRFSATSEKC 821


>Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical
           protein F11A5.10 protein.
          Length = 461

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = -1

Query: 323 RIGCTSSLTKATVTTLSTCFC--VFRTRARECTATGFLMTRP-SLIILRMFCLE-LVFAI 156
           ++G +SSL    +T  ST +C  V  T    C  T   + R  S  +L+++    ++  +
Sbjct: 232 KVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIV 291

Query: 155 SLISFGSNHTFFLPHRIT 102
           S +SF  + T  +P R+T
Sbjct: 292 SWVSFWFDRT-AIPARVT 308


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 326 TRIGCTSSLTKA-TVTTLSTCFCVFRTRARECTATGFLMTRPSLIILRMFCLELVFAISL 150
           T  GC+ + T+A T TT S       TRA   T   F  T+     +   CL+ +  ++ 
Sbjct: 528 TASGCSVTTTRAPTTTTKSAPTVTTTTRAPTTTTPAFKCTKDGFFGVPSDCLKFIRCVNG 587

Query: 149 ISF 141
           IS+
Sbjct: 588 ISY 590


>U14524-1|AAA50785.1|  461|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl alpha protein.
          Length = 461

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = -1

Query: 323 RIGCTSSLTKATVTTLSTCFC--VFRTRARECTATGFLMTRP-SLIILRMFCLE-LVFAI 156
           ++G +SSL    +T  ST +C  V  T    C  T   + R  S  +L+++    ++  +
Sbjct: 232 KVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIV 291

Query: 155 SLISFGSNHTFFLPHRIT 102
           S +SF  + T  +P R+T
Sbjct: 292 SWVSFWFDRT-AIPARVT 308


>AF024500-5|AAB70362.1|  288|Caenorhabditis elegans Hypothetical
           protein K06H6.2 protein.
          Length = 288

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 539 EARRNKVKEARNRRKERIAAKKED 610
           E R+N +K A N RKE + A K+D
Sbjct: 59  ELRKNALKSAENNRKELLIASKQD 82


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 399 WQFCTSGAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHSD-DPFYVLLCFSD 250
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F +
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDE 176


>U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical
           protein H03E18.2 protein.
          Length = 204

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = -3

Query: 405 SSWQFCTSGAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHSDDPFYVLLCFSDTSAGVYCY 226
           S + + T  +  LKP++   IV +++Y   L+LF+  +     F  +L F  + + ++ +
Sbjct: 93  SYFSYSTHSSTSLKPYIAHHIVMAISYCFCLFLFAMFAWKQHFFVEILSFCSSFSTLFSH 152


>U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical
           protein M02D8.3 protein.
          Length = 915

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 494 EEG*EARTKMLSDQAEARRNKVKEARNRRKERIAAKK 604
           EE  E +TKM  ++ E  + + KE  N+RKE+  A+K
Sbjct: 377 EEDKEKKTKMEMEK-EKEKTRKKEENNKRKEKKEAEK 412


>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
            protein Y39B6A.30 protein.
          Length = 1408

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 506  EARTKMLSDQAEARRNKVKEARNRRKERIAAKKE 607
            E + K+  ++ +A   KVK  + R KE++ A++E
Sbjct: 934  EEKVKVEKEKVKAEEEKVKVEKERNKEKVKAEEE 967


>AL132948-28|CAD31828.1|  263|Caenorhabditis elegans Hypothetical
           protein Y39B6A.36 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 157 IANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKTQK 267
           + NT  ++ + KMI+   V  KPV+VH+   ++  QK
Sbjct: 148 VKNTQPKKTV-KMIEKAAVKFKPVSVHAEDMIKSKQK 183


>U28730-7|AAA68258.2|  665|Caenorhabditis elegans Abnormal cell
           lineage protein 23 protein.
          Length = 665

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 261 CFSDTSAGVYCYRFLDDETILDHLTD 184
           C S+ S GVYC ++ DD+ I+  L D
Sbjct: 217 CQSENSKGVYCLQY-DDDKIVSGLRD 241


>AF275253-1|AAG28037.1|  665|Caenorhabditis elegans LIN-23 protein.
          Length = 665

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 261 CFSDTSAGVYCYRFLDDETILDHLTD 184
           C S+ S GVYC ++ DD+ I+  L D
Sbjct: 217 CQSENSKGVYCLQY-DDDKIVSGLRD 241


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 412 LSIFLAVLYFRSNFLK 365
           L++ LA++YFRSNF K
Sbjct: 8   LAVILAIIYFRSNFSK 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,367,227
Number of Sequences: 27780
Number of extensions: 341040
Number of successful extensions: 1139
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)