Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20174
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...   113   9e-26
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...   110   8e-25
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...   105   2e-23
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim...    46   3e-05
At1g73340.1 68414.m08489 cytochrome P450 family protein similar ...    31   0.46 
At5g41390.1 68418.m05029 hypothetical protein contains 1 predict...    29   1.9  
At3g06200.1 68416.m00713 guanylate kinase, putative similar to g...    29   3.2  
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p...    28   5.7  
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil...    28   5.7  
At3g04340.1 68416.m00459 FtsH protease family protein similar to...    27   7.5  
At1g47920.1 68414.m05337 syntaxin-related family protein contain...    27   7.5  

>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score =  113 bits (272), Expect = 9e-26
 Identities = 53/98 (54%), Positives = 63/98 (64%)
 Frame = +3

Query: 264 EARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKA 443
           EA+RKGRH G+GKR+GT  AR+P K LW                +KKIDRH+YH +YMK 
Sbjct: 68  EAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKV 127

Query: 444 KGNVFKNKRVLMEYIHRKKAEKPGRRCLATRLRPAAIK 557
           KGNVFKNKRVLME IH+ KAEK   + LA +     IK
Sbjct: 128 KGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIK 165



 Score =  101 bits (242), Expect = 4e-22
 Identities = 44/64 (68%), Positives = 54/64 (84%)
 Frame = +1

Query: 64  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 243
           M SLK+QKRLAASVM+CGK KVWLDPNE  +I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 244 ARVR 255
           +R R
Sbjct: 61  SRAR 64


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score =  110 bits (264), Expect = 8e-25
 Identities = 55/107 (51%), Positives = 66/107 (61%), Gaps = 5/107 (4%)
 Frame = +3

Query: 267 ARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAK 446
           A+RKGRH G+GKR+GT  AR+P K LW                 KKIDRH+YH +YMK K
Sbjct: 69  AKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVK 128

Query: 447 GNVFKNKRVLMEYIHRKKAEKPGRRCL-----ATRLRPAAIK*RRHA 572
           GNVFKNKRVLME IH+ KAEK   + L     A R +  A + R+HA
Sbjct: 129 GNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHA 175



 Score =  101 bits (242), Expect = 4e-22
 Identities = 43/65 (66%), Positives = 57/65 (87%)
 Frame = +1

Query: 64  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 243
           M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 244 ARVRK 258
           +R R+
Sbjct: 61  SRARQ 65


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score =  105 bits (252), Expect = 2e-23
 Identities = 52/107 (48%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
 Frame = +3

Query: 267 ARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAK 446
           A+ KGRH G+GKR+GT  AR+P K LW                 KKID+H+YH +YM+ K
Sbjct: 69  AKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVK 128

Query: 447 GNVFKNKRVLMEYIHRKKAEKPGRRCL-----ATRLRPAAIK*RRHA 572
           GNVFKNKRVLME IH+ KAEK   + L     A R +  A + R+HA
Sbjct: 129 GNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHA 175



 Score =  104 bits (250), Expect = 4e-23
 Identities = 46/65 (70%), Positives = 56/65 (86%)
 Frame = +1

Query: 64  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 243
           M SLKLQKRLAASVM+CGK KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 244 ARVRK 258
           +R RK
Sbjct: 61  SRARK 65


>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
           similar to 60S ribosomal protein L19-3
           (Swiss-Prot:P49693) [Arabidopsis thaliana]
          Length = 101

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +3

Query: 399 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 509
           KKID+ +Y H ++MK KG V+KNK VLME +H+   E+
Sbjct: 29  KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66


>At1g73340.1 68414.m08489 cytochrome P450 family protein similar to
           Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana];
           contains Pfam profile: PF00067 cytochrome P450
          Length = 512

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -1

Query: 140 GSNHTFFLPHRITEAASLFCSLRELILTR*DPTHTRKN*YGRQISC 3
           GS+ + F+  +I +  SL CS+  LIL R D +   +  YGR  SC
Sbjct: 65  GSHPSSFVEKQIKKFVSLLCSVLLLILKRPDNSGFNEIRYGRIFSC 110


>At5g41390.1 68418.m05029 hypothetical protein contains 1 predicted
           transmembrane domain;
          Length = 297

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 199 KDGLVIKKPVAVHSRARV-RKTQKHVERVVTVALVREEVQPMRVCHRRNYGYKD 357
           +DGL+  +P++V    ++ R  Q  +   VTV L+   ++ +R  HR  + ++D
Sbjct: 178 RDGLISPQPMSVPPAQQMSRIDQPAIHLPVTVTLLHRAIRQLRAIHRDIHQHQD 231


>At3g06200.1 68416.m00713 guanylate kinase, putative similar to
           guanylate kinase (GMP kinase) [Bacillus halodurans]
           Swiss-Prot:Q9K9Y2; contains Pfam profile: PF00625
           guanylate kinase
          Length = 282

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +1

Query: 208 LVIKKPVAVHSRARVRKTQKHVERVVTVALVREEVQPMRVCHRRNYGY 351
           LV +  +A+  R   RKT+   E +V VA  REEV+     H +N+ Y
Sbjct: 206 LVAESELAMVERLIDRKTESQEELLVRVATAREEVR-----HLKNFDY 248


>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
           protease, putative similar to cysteine proteinase RD21A
           precursor (thiol protease) GI:435619, SP:P43297 from
           [Arabidopsis thaliana]
          Length = 463

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 224 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 129
           GFL   P +++L M  +     +S+IS+  NH
Sbjct: 2   GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33


>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
           to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
           {Homo sapiens}; contains Pfam profile PF02127:
           Aminopeptidase I zinc metalloprotease (M18)
          Length = 526

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 140 GSNHTFFLPHRITEAASLFCSLRELI 63
           G+N+ F    R+   AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323


>At3g04340.1 68416.m00459 FtsH protease family protein similar to
           chloroplast FtsH protease [Arabidopsis thaliana]
           GI:1483215; contains Pfam profiles PF01434: Peptidase
           family M41, PF00004: ATPase AAA family
          Length = 960

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 396 AKKIDRHLYHSLYMKAKGNVFKNKRVL 476
           A K+++ +Y   Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895


>At1g47920.1 68414.m05337 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis;
          Length = 379

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -3

Query: 327 YAHWLYLFSYQSHSDDPFYVLLCFSDTSAG-VYCYRFLDD---ETILDHLTDVLSGV 169
           Y  + Y + Y   S D       +SD   G  YCY ++DD   E I   +T++L+GV
Sbjct: 159 YYDYNYDYEYDDESGD------YYSDDDEGRSYCYSYVDDERKEPIFGDVTNLLAGV 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,612,161
Number of Sequences: 28952
Number of extensions: 321578
Number of successful extensions: 913
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)