Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20173
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    71   2e-13
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.7  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    27   2.7  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   6.3  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.4  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 32/77 (41%), Positives = 49/77 (63%)
 Frame = +1

Query: 25  KDEDDNSSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTTQEATD 204
           K +DD   + + N+++  V Q+ R FN + + PRK   +L+KI YL+  GE+F  ++AT+
Sbjct: 5   KKDDDGDESIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEKQATE 64

Query: 205 AFFATTKLFQSKEIMLR 255
            FF  TKLFQ K+  LR
Sbjct: 65  LFFGITKLFQHKDPSLR 81



 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
 Frame = +3

Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDM-TGKEDLYRAAAIRALCSITDASMLQAIERYM 431
           + VY+ IKELS +A+DVI++TSS+ KD  TG+E +YR  AIR+L  + DA+ + AIER +
Sbjct: 82  QFVYIIIKELSVVAEDVIMITSSIMKDTATGRETIYRPNAIRSLIRVIDANTVPAIERIL 141

Query: 432 KQAIVD 449
              IVD
Sbjct: 142 TTGIVD 147



 Score = 31.9 bits (69), Expect = 0.096
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 24/94 (25%)
 Frame = +2

Query: 512 DLVRRWANEAQETINSDNA----------------------MVSYHALGVLVLSRRNDKL 625
           D+V RW NE Q+ + S N                       +  YHALG+L   RR+D +
Sbjct: 169 DIVSRWNNEVQDAVTSHNVGRKVASSPFFTSTLGYTPNASGISQYHALGLLYRIRRHDSI 228

Query: 626 STVKLVTRL--SKSHIKSPYSLCLLIRLAAQLCD 721
           +  KL+  L  +   + + ++  +LIR  + L D
Sbjct: 229 AMNKLLQLLVSNLGTVSNSHAFVMLIRYISSLMD 262


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 90  FLKYYSFIEILVWVTAVIIFILNISL 13
           FLK + FI ++  +T +++ +L ISL
Sbjct: 284 FLKTFDFIGLVCVITGIVLILLGISL 309


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 642 TSLTVDNLSFRRDNTRTPNA*YDT-IALSELIVS*ASLAHRRTRSGR 505
           TSLT+D + +  D      + +D  + +  LIV+  S A  R RSGR
Sbjct: 790 TSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRSGR 836


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 153 YFRKY**TFSRDNERLIKLSCFLKYYSFIEILVWVTAVIIFILNISL 13
           YF  Y  TF  +   L   +   +Y++ I    W+T  ++F++ I+L
Sbjct: 169 YFMNYFVTFPLE---LTTCAITFRYWTDINSCAWITIFLVFVICINL 212


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -3

Query: 105 IKLSCFLKYYSFIEILVWVTAVIIFILNISL 13
           +    FL+ + F+ I+   T V++F+L +++
Sbjct: 273 VSFCVFLRDFDFVGIVTITTGVVLFLLGLNI 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,721
Number of Sequences: 5004
Number of extensions: 52370
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)