Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20173
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 95 7e-20
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 84 1e-16
12_01_0622 + 5124213-5125292,5126820-5128685 31 0.71
04_03_0093 - 11085882-11087339 30 1.6
02_04_0123 + 19961904-19962096,19962836-19963029,19963334-199634... 30 1.6
09_02_0334 - 7374974-7375032,7375370-7375586 28 6.6
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 94.7 bits (225), Expect = 7e-20
Identities = 46/68 (67%), Positives = 53/68 (77%)
Frame = +3
Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMK 434
R+VYL IKELS + +VIIVTSSL KDM K D+YRA AIR LC I D ++L IERY+K
Sbjct: 87 RLVYLMIKELSPSSDEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDGTLLTQIERYLK 146
Query: 435 QAIVDKNP 458
QAIVDKNP
Sbjct: 147 QAIVDKNP 154
Score = 90.2 bits (214), Expect = 1e-18
Identities = 45/82 (54%), Positives = 57/82 (69%)
Frame = +1
Query: 10 LKRDVKDEDDNSSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTT 189
+K+D DED S P+ ++K VLQE R F+ + RKCS ++TK+LYLLNQGE FT
Sbjct: 6 MKKDDDDEDVEYS-PFYGIEKGAVLQEARAFHDPQLDARKCSQVITKLLYLLNQGETFTK 64
Query: 190 QEATDAFFATTKLFQSKEIMLR 255
EAT+ FFA TKLFQSK+ LR
Sbjct: 65 VEATEVFFAVTKLFQSKDAGLR 86
Score = 70.1 bits (164), Expect = 2e-12
Identities = 29/69 (42%), Positives = 49/69 (71%)
Frame = +2
Query: 509 PDLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLC 688
P++V+RW+NE QE + S A+V +H L +L R+ND+L+ K+V+ L++ ++SP + C
Sbjct: 172 PEIVKRWSNEVQEAVQSRFALVQFHGLALLHQIRQNDRLAISKMVSGLTRGSVRSPLAQC 231
Query: 689 LLIRLAAQL 715
LLIR +Q+
Sbjct: 232 LLIRYTSQV 240
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 84.2 bits (199), Expect = 1e-16
Identities = 39/82 (47%), Positives = 57/82 (69%)
Frame = +1
Query: 10 LKRDVKDEDDNSSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTT 189
+K+D +++ +P+ ++K VLQE R F+ + R+C ++TK+LYLLNQG+ FT
Sbjct: 7 VKKDDDLDEEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTK 66
Query: 190 QEATDAFFATTKLFQSKEIMLR 255
EAT+ FFATTKLFQSK+ LR
Sbjct: 67 VEATEVFFATTKLFQSKDAGLR 88
Score = 80.2 bits (189), Expect = 2e-15
Identities = 48/85 (56%), Positives = 54/85 (63%), Gaps = 17/85 (20%)
Frame = +3
Query: 255 RMVYLCIKELSKLAQD-----------------VIIVTSSLTKDMTGKEDLYRAAAIRAL 383
RMVYL IKELS A + VIIVTSSL KDM K D+YRA AIR L
Sbjct: 89 RMVYLMIKELSPSADEFSAVYGSLKVSVLHLLQVIIVTSSLMKDMNSKTDMYRANAIRVL 148
Query: 384 CSITDASMLQAIERYMKQAIVDKNP 458
C I D+++L IERY+KQAIVDKNP
Sbjct: 149 CRIIDSTLLTQIERYLKQAIVDKNP 173
Score = 74.9 bits (176), Expect = 6e-14
Identities = 32/69 (46%), Positives = 50/69 (72%)
Frame = +2
Query: 509 PDLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLC 688
P++V+RW+NE QE + S A+V +HAL +L R+ND+L+ KLVT L++ ++SP + C
Sbjct: 191 PEVVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQC 250
Query: 689 LLIRLAAQL 715
LLIR +Q+
Sbjct: 251 LLIRYTSQV 259
>12_01_0622 + 5124213-5125292,5126820-5128685
Length = 981
Score = 31.5 bits (68), Expect = 0.71
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 509 PDLVRRWANEAQETINSDNAMVS-YHALGV--LVLSRRNDKLSTVKLVTRLSKSHIKSP 676
P+L + W N Q+ + DN + H L + LVL + K V+L+ +H+K P
Sbjct: 899 PELQQLWVNRCQKLSDDDNGLSGVLHLLNLNELVLKKCGPKEKLVQLLQSQLSTHVKRP 957
>04_03_0093 - 11085882-11087339
Length = 485
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 427 YRSIACSIEASVMLHNALIAAARYRSSLPVMSLVKEEVTMITSCANLLS 281
+ I C A V+LH + RY+ LP E MI C N+L+
Sbjct: 226 FAMICCHNAAHVVLHTQRLRTLRYKDGLP----AGENFLMIADCTNVLA 270
>02_04_0123 +
19961904-19962096,19962836-19963029,19963334-19963465,
19963921-19964038,19964248-19964484,19964576-19964658,
19964777-19965004,19965394-19965470,19965590-19965626,
19965786-19965952,19966156-19966234,19966301-19966378,
19967459-19967575,19967999-19968379,19968453-19968590,
19968680-19968769,19968832-19968840
Length = 785
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = -2
Query: 601 YQNTQCVIRHHRIVRIDCFLSFISPSPNKIRAVEDK*SAETNAAELTAGFLSTIACFIYR 422
++ Q V++HH+IV ID + +S ++ +D + + A E L T+A +
Sbjct: 514 WKRLQRVLKHHQIVFIDLIATNMSAIFMELLRQDDSLTCDEYALEARLHSLRTVAAILPN 573
Query: 421 SIACSIEASVMLHNALIAAA 362
+ EA + L A+ +A
Sbjct: 574 NGLPEFEAFISLLKAISTSA 593
>09_02_0334 - 7374974-7375032,7375370-7375586
Length = 91
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 434 TGDCGQEPGRQFCGISLCA 490
TGDCGQE R++ + LCA
Sbjct: 8 TGDCGQEAMRRWIRLPLCA 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,690,075
Number of Sequences: 37544
Number of extensions: 336010
Number of successful extensions: 775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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