Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20173
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)             116   2e-26
SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)             32   0.55 
SB_47813| Best HMM Match : HEAT (HMM E-Value=5.9e-06)                  28   8.9  

>SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score =  116 bits (279), Expect = 2e-26
 Identities = 54/68 (79%), Positives = 63/68 (92%)
 Frame = +3

Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMK 434
           RMVYL IKEL+ +A+DVIIVTSSLTKDMTGKED++RA+AIRALC ITD +MLQ IERY+K
Sbjct: 62  RMVYLAIKELANIAEDVIIVTSSLTKDMTGKEDMFRASAIRALCRITDNTMLQGIERYLK 121

Query: 435 QAIVDKNP 458
           QA+VDKNP
Sbjct: 122 QAVVDKNP 129



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/83 (45%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
 Frame = +2

Query: 479 SLCASFVFYRP--DLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRL 652
           +L +S    +P  D+V+RW NEAQE ++SDN MV YHALG+L   +++D+L+  KL+ + 
Sbjct: 135 ALVSSLHLLKPNFDVVKRWVNEAQEAVSSDNTMVQYHALGLLYHIKQSDRLAVSKLIAKH 194

Query: 653 SKSHIKSPYSLCLLIRLAAQLCD 721
           SK  ++SPY++C+LIR+A +  D
Sbjct: 195 SKHSLRSPYAVCMLIRIATKYLD 217



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 35/54 (64%), Positives = 42/54 (77%)
 Frame = +1

Query: 10  LKRDVKDEDDNSSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQ 171
           L+RD KDE++  SNP+QNLDK  VLQE R FN+T +  RKC  ILTKILYL+NQ
Sbjct: 4   LRRDKKDEEEGLSNPFQNLDKGQVLQEARVFNETPINVRKCIHILTKILYLINQ 57


>SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)
          Length = 723

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 288 KLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAI 419
           KL  ++I+V  +  KD+    +  R + +R LC + +A +L+ +
Sbjct: 284 KLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPL 327


>SB_47813| Best HMM Match : HEAT (HMM E-Value=5.9e-06)
          Length = 623

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 705 AKRISKQREYGDFMWDLESRVTSLTVDNLS 616
           A+  S  R Y DF+ DL SRV +L + ++S
Sbjct: 227 ARDTSGTRAYADFIVDLASRVPTLVLQSIS 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,781,750
Number of Sequences: 59808
Number of extensions: 410722
Number of successful extensions: 1097
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)