BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20173
(728 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC066650-1|AAH66650.1| 874|Homo sapiens coatomer protein comple... 111 3e-24
AF100756-1|AAD43020.1| 874|Homo sapiens coat protein gamma-cop ... 111 3e-24
AB047846-1|BAB17657.1| 874|Homo sapiens gamma1-COP protein. 111 3e-24
BC110796-1|AAI10797.1| 726|Homo sapiens COPG2 protein protein. 109 1e-23
BC017443-1|AAH17443.2| 865|Homo sapiens COPG2 protein protein. 109 1e-23
AK022934-1|BAB14315.1| 799|Homo sapiens protein ( Homo sapiens ... 109 1e-23
AF207598-1|AAF19433.1| 871|Homo sapiens coat protein gamma2-COP... 109 1e-23
AF157833-1|AAF14271.1| 871|Homo sapiens nonclathrin coat protei... 109 1e-23
AB047847-1|BAB17658.1| 871|Homo sapiens gamma2-COP protein. 109 1e-23
BC020498-1|AAH20498.2| 699|Homo sapiens COPG protein protein. 77 9e-14
BC037280-1|AAH37280.1| 953|Homo sapiens coatomer protein comple... 31 5.6
AF111807-1|AAL39009.1| 953|Homo sapiens MSTP026 protein. 31 5.6
AF084457-1|AAD41240.1| 953|Homo sapiens beta-cop homolog protein. 31 5.6
>BC066650-1|AAH66650.1| 874|Homo sapiens coatomer protein complex,
subunit gamma protein.
Length = 874
Score = 111 bits (266), Expect = 3e-24
Identities = 54/68 (79%), Positives = 60/68 (88%)
Frame = +3
Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMK 434
RM YL IKE+S +A+DVIIVTSSLTKDMTGKED YR A+RALC ITD++MLQAIERYMK
Sbjct: 86 RMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPAVRALCQITDSTMLQAIERYMK 145
Query: 435 QAIVDKNP 458
QAIVDK P
Sbjct: 146 QAIVDKVP 153
Score = 103 bits (246), Expect = 9e-22
Identities = 51/82 (62%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +1
Query: 13 KRDVKDEDDNS-SNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTT 189
K D KDE+ SNP+Q+L+K+ VLQE R FN+T + PRKC+ ILTKILYL+NQGE+ T
Sbjct: 4 KFDKKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGT 63
Query: 190 QEATDAFFATTKLFQSKEIMLR 255
EAT+AFFA TKLFQS + LR
Sbjct: 64 TEATEAFFAMTKLFQSNDPTLR 85
Score = 81.8 bits (193), Expect = 2e-15
Identities = 32/67 (47%), Positives = 54/67 (80%)
Frame = +2
Query: 512 DLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLCL 691
D+V+RW NEAQE +SDN MV YHALG+L R+ND+L+ K+++++++ +KSP++ C+
Sbjct: 172 DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVNKMISKVTRHGLKSPFAYCM 231
Query: 692 LIRLAAQ 712
+IR+A++
Sbjct: 232 MIRVASK 238
>AF100756-1|AAD43020.1| 874|Homo sapiens coat protein gamma-cop
protein.
Length = 874
Score = 111 bits (266), Expect = 3e-24
Identities = 54/68 (79%), Positives = 60/68 (88%)
Frame = +3
Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMK 434
RM YL IKE+S +A+DVIIVTSSLTKDMTGKED YR A+RALC ITD++MLQAIERYMK
Sbjct: 86 RMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPAVRALCQITDSTMLQAIERYMK 145
Query: 435 QAIVDKNP 458
QAIVDK P
Sbjct: 146 QAIVDKVP 153
Score = 103 bits (246), Expect = 9e-22
Identities = 51/82 (62%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +1
Query: 13 KRDVKDEDDNS-SNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTT 189
K D KDE+ SNP+Q+L+K+ VLQE R FN+T + PRKC+ ILTKILYL+NQGE+ T
Sbjct: 4 KFDKKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGT 63
Query: 190 QEATDAFFATTKLFQSKEIMLR 255
EAT+AFFA TKLFQS + LR
Sbjct: 64 TEATEAFFAMTKLFQSNDPTLR 85
Score = 81.8 bits (193), Expect = 2e-15
Identities = 32/67 (47%), Positives = 54/67 (80%)
Frame = +2
Query: 512 DLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLCL 691
D+V+RW NEAQE +SDN MV YHALG+L R+ND+L+ K+++++++ +KSP++ C+
Sbjct: 172 DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVNKMISKVTRHGLKSPFAYCM 231
Query: 692 LIRLAAQ 712
+IR+A++
Sbjct: 232 MIRVASK 238
>AB047846-1|BAB17657.1| 874|Homo sapiens gamma1-COP protein.
Length = 874
Score = 111 bits (266), Expect = 3e-24
Identities = 54/68 (79%), Positives = 60/68 (88%)
Frame = +3
Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMK 434
RM YL IKE+S +A+DVIIVTSSLTKDMTGKED YR A+RALC ITD++MLQAIERYMK
Sbjct: 86 RMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPAVRALCQITDSTMLQAIERYMK 145
Query: 435 QAIVDKNP 458
QAIVDK P
Sbjct: 146 QAIVDKVP 153
Score = 103 bits (246), Expect = 9e-22
Identities = 51/82 (62%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +1
Query: 13 KRDVKDEDDNS-SNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTT 189
K D KDE+ SNP+Q+L+K+ VLQE R FN+T + PRKC+ ILTKILYL+NQGE+ T
Sbjct: 4 KFDKKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGT 63
Query: 190 QEATDAFFATTKLFQSKEIMLR 255
EAT+AFFA TKLFQS + LR
Sbjct: 64 TEATEAFFAMTKLFQSNDPTLR 85
Score = 81.8 bits (193), Expect = 2e-15
Identities = 32/67 (47%), Positives = 54/67 (80%)
Frame = +2
Query: 512 DLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLCL 691
D+V+RW NEAQE +SDN MV YHALG+L R+ND+L+ K+++++++ +KSP++ C+
Sbjct: 172 DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVNKMISKVTRHGLKSPFAYCM 231
Query: 692 LIRLAAQ 712
+IR+A++
Sbjct: 232 MIRVASK 238
>BC110796-1|AAI10797.1| 726|Homo sapiens COPG2 protein protein.
Length = 726
Score = 109 bits (261), Expect = 1e-23
Identities = 52/66 (78%), Positives = 59/66 (89%)
Frame = +3
Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMK 434
RM YL IKE++ +++DVIIVTSSLTKDMTGKED+YR AIRALC ITD +MLQAIERYMK
Sbjct: 86 RMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMK 145
Query: 435 QAIVDK 452
QAIVDK
Sbjct: 146 QAIVDK 151
Score = 103 bits (248), Expect = 5e-22
Identities = 52/82 (63%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Frame = +1
Query: 13 KRDVKDEDDNS-SNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTT 189
K D KDE+ S SNP+Q+L+K+ VLQE R FN+T + PR+C ILTKILYLLNQGE+F T
Sbjct: 4 KFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGT 63
Query: 190 QEATDAFFATTKLFQSKEIMLR 255
EAT+AFFA T+LFQS + LR
Sbjct: 64 TEATEAFFAMTRLFQSNDQTLR 85
Score = 84.2 bits (199), Expect = 4e-16
Identities = 36/68 (52%), Positives = 53/68 (77%)
Frame = +2
Query: 512 DLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLCL 691
D+V+RW NEAQE +SDN MV YHALGVL R+ND+L+ K++ + +KS +KS ++ C+
Sbjct: 172 DVVKRWINEAQEAASSDNIMVQYHALGVLYHLRKNDRLAVSKMLNKFTKSGLKSQFAYCM 231
Query: 692 LIRLAAQL 715
LIR+A++L
Sbjct: 232 LIRIASRL 239
>BC017443-1|AAH17443.2| 865|Homo sapiens COPG2 protein protein.
Length = 865
Score = 109 bits (261), Expect = 1e-23
Identities = 52/66 (78%), Positives = 59/66 (89%)
Frame = +3
Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMK 434
RM YL IKE++ +++DVIIVTSSLTKDMTGKED+YR AIRALC ITD +MLQAIERYMK
Sbjct: 80 RMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMK 139
Query: 435 QAIVDK 452
QAIVDK
Sbjct: 140 QAIVDK 145
Score = 101 bits (242), Expect = 3e-21
Identities = 50/78 (64%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
Frame = +1
Query: 25 KDEDDNS-SNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTTQEAT 201
KDE+ S SNP+Q+L+K+ VLQE R FN+T + PR+C ILTKILYLLNQGE+F T EAT
Sbjct: 2 KDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEAT 61
Query: 202 DAFFATTKLFQSKEIMLR 255
+AFFA T+LFQS + LR
Sbjct: 62 EAFFAMTRLFQSNDQTLR 79
Score = 84.2 bits (199), Expect = 4e-16
Identities = 36/68 (52%), Positives = 53/68 (77%)
Frame = +2
Query: 512 DLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLCL 691
D+V+RW NEAQE +SDN MV YHALGVL R+ND+L+ K++ + +KS +KS ++ C+
Sbjct: 166 DVVKRWINEAQEAASSDNIMVQYHALGVLYHLRKNDRLAVSKMLNKFTKSGLKSQFAYCM 225
Query: 692 LIRLAAQL 715
LIR+A++L
Sbjct: 226 LIRIASRL 233
>AK022934-1|BAB14315.1| 799|Homo sapiens protein ( Homo sapiens
cDNA FLJ12872 fis, clone NT2RP2003760, highly similar to
COATOMER GAMMA SUBUNIT. ).
Length = 799
Score = 109 bits (261), Expect = 1e-23
Identities = 52/66 (78%), Positives = 59/66 (89%)
Frame = +3
Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMK 434
RM YL IKE++ +++DVIIVTSSLTKDMTGKED+YR AIRALC ITD +MLQAIERYMK
Sbjct: 14 RMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMK 73
Query: 435 QAIVDK 452
QAIVDK
Sbjct: 74 QAIVDK 79
Score = 82.2 bits (194), Expect = 2e-15
Identities = 36/68 (52%), Positives = 52/68 (76%)
Frame = +2
Query: 512 DLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLCL 691
D+V+RW NEAQE +SDN MV YHALGVL R+ND+L+ K++ + +KS KS ++ C+
Sbjct: 100 DVVKRWINEAQEAASSDNIMVQYHALGVLYHLRKNDRLAVSKMLNKFTKSGPKSQFAYCM 159
Query: 692 LIRLAAQL 715
LIR+A++L
Sbjct: 160 LIRIASRL 167
>AF207598-1|AAF19433.1| 871|Homo sapiens coat protein gamma2-COP
protein.
Length = 871
Score = 109 bits (261), Expect = 1e-23
Identities = 52/66 (78%), Positives = 59/66 (89%)
Frame = +3
Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMK 434
RM YL IKE++ +++DVIIVTSSLTKDMTGKED+YR AIRALC ITD +MLQAIERYMK
Sbjct: 86 RMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMK 145
Query: 435 QAIVDK 452
QAIVDK
Sbjct: 146 QAIVDK 151
Score = 103 bits (248), Expect = 5e-22
Identities = 52/82 (63%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Frame = +1
Query: 13 KRDVKDEDDNS-SNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTT 189
K D KDE+ S SNP+Q+L+K+ VLQE R FN+T + PR+C ILTKILYLLNQGE+F T
Sbjct: 4 KFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGT 63
Query: 190 QEATDAFFATTKLFQSKEIMLR 255
EAT+AFFA T+LFQS + LR
Sbjct: 64 TEATEAFFAMTRLFQSNDQTLR 85
Score = 84.2 bits (199), Expect = 4e-16
Identities = 36/68 (52%), Positives = 53/68 (77%)
Frame = +2
Query: 512 DLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLCL 691
D+V+RW NEAQE +SDN MV YHALGVL R+ND+L+ K++ + +KS +KS ++ C+
Sbjct: 172 DVVKRWINEAQEAASSDNIMVQYHALGVLYHLRKNDRLAVSKMLNKFTKSGLKSQFAYCM 231
Query: 692 LIRLAAQL 715
LIR+A++L
Sbjct: 232 LIRIASRL 239
>AF157833-1|AAF14271.1| 871|Homo sapiens nonclathrin coat protein
gamma2-COP protein.
Length = 871
Score = 109 bits (261), Expect = 1e-23
Identities = 52/66 (78%), Positives = 59/66 (89%)
Frame = +3
Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMK 434
RM YL IKE++ +++DVIIVTSSLTKDMTGKED+YR AIRALC ITD +MLQAIERYMK
Sbjct: 86 RMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMK 145
Query: 435 QAIVDK 452
QAIVDK
Sbjct: 146 QAIVDK 151
Score = 103 bits (248), Expect = 5e-22
Identities = 52/82 (63%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Frame = +1
Query: 13 KRDVKDEDDNS-SNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTT 189
K D KDE+ S SNP+Q+L+K+ VLQE R FN+T + PR+C ILTKILYLLNQGE+F T
Sbjct: 4 KFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGT 63
Query: 190 QEATDAFFATTKLFQSKEIMLR 255
EAT+AFFA T+LFQS + LR
Sbjct: 64 TEATEAFFAMTRLFQSNDQTLR 85
Score = 84.2 bits (199), Expect = 4e-16
Identities = 36/68 (52%), Positives = 53/68 (77%)
Frame = +2
Query: 512 DLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLCL 691
D+V+RW NEAQE +SDN MV YHALGVL R+ND+L+ K++ + +KS +KS ++ C+
Sbjct: 172 DVVKRWINEAQEAASSDNIMVQYHALGVLYHLRKNDRLAVSKMLNKFTKSGLKSQFAYCM 231
Query: 692 LIRLAAQL 715
LIR+A++L
Sbjct: 232 LIRIASRL 239
>AB047847-1|BAB17658.1| 871|Homo sapiens gamma2-COP protein.
Length = 871
Score = 109 bits (261), Expect = 1e-23
Identities = 52/66 (78%), Positives = 59/66 (89%)
Frame = +3
Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMK 434
RM YL IKE++ +++DVIIVTSSLTKDMTGKED+YR AIRALC ITD +MLQAIERYMK
Sbjct: 86 RMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMK 145
Query: 435 QAIVDK 452
QAIVDK
Sbjct: 146 QAIVDK 151
Score = 103 bits (248), Expect = 5e-22
Identities = 52/82 (63%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Frame = +1
Query: 13 KRDVKDEDDNS-SNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTT 189
K D KDE+ S SNP+Q+L+K+ VLQE R FN+T + PR+C ILTKILYLLNQGE+F T
Sbjct: 4 KFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGT 63
Query: 190 QEATDAFFATTKLFQSKEIMLR 255
EAT+AFFA T+LFQS + LR
Sbjct: 64 TEATEAFFAMTRLFQSNDQTLR 85
Score = 84.2 bits (199), Expect = 4e-16
Identities = 36/68 (52%), Positives = 53/68 (77%)
Frame = +2
Query: 512 DLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLCL 691
D+V+RW NEAQE +SDN MV YHALGVL R+ND+L+ K++ + +KS +KS ++ C+
Sbjct: 172 DVVKRWINEAQEAASSDNIMVQYHALGVLYHLRKNDRLAVSKMLNKFTKSGLKSQFAYCM 231
Query: 692 LIRLAAQL 715
LIR+A++L
Sbjct: 232 LIRIASRL 239
>BC020498-1|AAH20498.2| 699|Homo sapiens COPG protein protein.
Length = 699
Score = 76.6 bits (180), Expect = 9e-14
Identities = 30/63 (47%), Positives = 50/63 (79%)
Frame = +2
Query: 524 RWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLCLLIRL 703
RW NEAQE +SDN MV YHALG+L R+ND+L+ K+++++++ +KSP++ C++IR+
Sbjct: 1 RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVNKMISKVTRHGLKSPFAYCMMIRV 60
Query: 704 AAQ 712
A++
Sbjct: 61 ASK 63
>BC037280-1|AAH37280.1| 953|Homo sapiens coatomer protein complex,
subunit beta 1 protein.
Length = 953
Score = 30.7 bits (66), Expect = 5.6
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 288 KLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAI 419
+L ++I+V + KD+ + R + +R LC + +A +L+ +
Sbjct: 93 RLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPL 136
>AF111807-1|AAL39009.1| 953|Homo sapiens MSTP026 protein.
Length = 953
Score = 30.7 bits (66), Expect = 5.6
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 288 KLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAI 419
+L ++I+V + KD+ + R + +R LC + +A +L+ +
Sbjct: 93 RLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPL 136
>AF084457-1|AAD41240.1| 953|Homo sapiens beta-cop homolog protein.
Length = 953
Score = 30.7 bits (66), Expect = 5.6
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 288 KLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAI 419
+L ++I+V + KD+ + R + +R LC + +A +L+ +
Sbjct: 93 RLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPL 136
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,501,047
Number of Sequences: 237096
Number of extensions: 1857841
Number of successful extensions: 3449
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3449
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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