Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20173
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical pr...   114   5e-26
Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical pr...   114   5e-26
AF067943-7|AAO12415.1|  420|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical ...    30   1.9  

>Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical
           protein T14G10.5b protein.
          Length = 883

 Score =  114 bits (275), Expect = 5e-26
 Identities = 54/67 (80%), Positives = 61/67 (91%)
 Frame = +3

Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMK 434
           RMVYL +KEL++++ DVIIVTSSLTKDMTG+EDLYRAAAIRALC ITD  MLQ IERYMK
Sbjct: 95  RMVYLAVKELAEVSDDVIIVTSSLTKDMTGREDLYRAAAIRALCKITDTGMLQTIERYMK 154

Query: 435 QAIVDKN 455
           QAIVD+N
Sbjct: 155 QAIVDRN 161



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 44/90 (48%), Positives = 60/90 (66%)
 Frame = +1

Query: 10  LKRDVKDEDDNSSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTT 189
           +K + KDE+    N Y +LDKT VLQE R FN+T +  RKC  IL+K++Y++ QGE+   
Sbjct: 14  MKTNKKDEE-TGGNVYAHLDKTSVLQEARAFNETPINARKCCFILSKLIYIIQQGESIGR 72

Query: 190 QEATDAFFATTKLFQSKEIMLRVWFIFASK 279
            EAT+AFF  TKL+QSK++ LR     A K
Sbjct: 73  TEATEAFFGVTKLWQSKDVSLRRMVYLAVK 102



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 39/73 (53%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
 Frame = +2

Query: 512 DLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLCL 691
           ++VRRWANE QE ++SDN MV YHAL +L   R ND+L+  KLV + SK+ ++SPY++C 
Sbjct: 181 EVVRRWANEVQEAVSSDNHMVQYHALALLYQIRANDRLAVNKLVQKFSKNALRSPYAVCY 240

Query: 692 LIRLAAQ-LCDGD 727
           LIR+A + L D D
Sbjct: 241 LIRIATRCLVDDD 253


>Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical
           protein T14G10.5a protein.
          Length = 870

 Score =  114 bits (275), Expect = 5e-26
 Identities = 54/67 (80%), Positives = 61/67 (91%)
 Frame = +3

Query: 255 RMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMK 434
           RMVYL +KEL++++ DVIIVTSSLTKDMTG+EDLYRAAAIRALC ITD  MLQ IERYMK
Sbjct: 82  RMVYLAVKELAEVSDDVIIVTSSLTKDMTGREDLYRAAAIRALCKITDTGMLQTIERYMK 141

Query: 435 QAIVDKN 455
           QAIVD+N
Sbjct: 142 QAIVDRN 148



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 44/90 (48%), Positives = 60/90 (66%)
 Frame = +1

Query: 10  LKRDVKDEDDNSSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTT 189
           +K + KDE+    N Y +LDKT VLQE R FN+T +  RKC  IL+K++Y++ QGE+   
Sbjct: 1   MKTNKKDEE-TGGNVYAHLDKTSVLQEARAFNETPINARKCCFILSKLIYIIQQGESIGR 59

Query: 190 QEATDAFFATTKLFQSKEIMLRVWFIFASK 279
            EAT+AFF  TKL+QSK++ LR     A K
Sbjct: 60  TEATEAFFGVTKLWQSKDVSLRRMVYLAVK 89



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 39/73 (53%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
 Frame = +2

Query: 512 DLVRRWANEAQETINSDNAMVSYHALGVLVLSRRNDKLSTVKLVTRLSKSHIKSPYSLCL 691
           ++VRRWANE QE ++SDN MV YHAL +L   R ND+L+  KLV + SK+ ++SPY++C 
Sbjct: 168 EVVRRWANEVQEAVSSDNHMVQYHALALLYQIRANDRLAVNKLVQKFSKNALRSPYAVCY 227

Query: 692 LIRLAAQ-LCDGD 727
           LIR+A + L D D
Sbjct: 228 LIRIATRCLVDDD 240


>AF067943-7|AAO12415.1|  420|Caenorhabditis elegans Hypothetical
           protein F59B1.8 protein.
          Length = 420

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = -1

Query: 383 QRSYCGRP----VQILFTGHVFSQRGSHYDHILRQFTQFFDAKINHTRSMISLD 234
           Q S+ G P    V++L +    + R SH++HIL QF  +F  +I    +  +L+
Sbjct: 298 QESHMGNPAEDLVRLLVSTISGADRQSHWEHILEQFYTYFTDEIGSNNAPYTLE 351


>Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical protein
            ZK930.1 protein.
          Length = 1354

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +2

Query: 410  TSYRTIYETGDCGQEPGRQFCGISLCASFVFYRPDLVRRWANEAQETINSDNAMVSYHAL 589
            T+YRTI+E  D    P     G S    FV Y   ++   A E Q+ +  D+   +YH  
Sbjct: 1274 TAYRTIFEENDTSTAPS----GAS-TDPFVIYERTVLDTEAKENQKVVPLDSKPSTYHRT 1328

Query: 590  GVLVLSRRNDKL 625
             +  +   N +L
Sbjct: 1329 PITDMMLLNSEL 1340


>AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical
           protein Y25C1A.5 protein.
          Length = 971

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 288 KLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAI 419
           KL  ++I+V  +  KD+    +  R + +R LC + +  +L+ +
Sbjct: 94  KLLHEMILVCDAYRKDLQHPNEFVRGSTLRFLCKLREPELLEPL 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,309,399
Number of Sequences: 27780
Number of extensions: 296818
Number of successful extensions: 827
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)