Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20172
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 103 3e-23
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 56 4e-09
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 48 1e-06
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 36 0.006
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 34 0.014
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 31 0.17
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.29
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.68
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 27 2.7
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 2.7
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 26 3.6
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.6
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 4.8
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 6.3
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 6.3
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 8.4
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 25 8.4
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 103 bits (246), Expect = 3e-23
Identities = 50/81 (61%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
Frame = +3
Query: 255 AVSKNAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 431
AVSK A APIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN ANV
Sbjct: 39 AVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANV 98
Query: 432 IRYFPTQALNFAFKDKYKQVF 494
+RYFPTQALNFAFKDK+K++F
Sbjct: 99 LRYFPTQALNFAFKDKFKKMF 119
Score = 30.3 bits (65), Expect = 0.22
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 321 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 500
S + ++++ G+VD + + + GL +RG +V+ + L F D K V L
Sbjct: 166 SAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLV 225
Query: 501 G 503
G
Sbjct: 226 G 226
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 56.0 bits (129), Expect = 4e-09
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = +3
Query: 258 VSKNAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 437
VS+ AV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N +R
Sbjct: 33 VSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLR 85
Query: 438 YFPTQALNFAFKDKYKQ 488
FP A+ FA + KQ
Sbjct: 86 AFPYGAVQFATFNMLKQ 102
Score = 30.3 bits (65), Expect = 0.22
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 348 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 464
YK I A I K +G+ F+RG +N+++ P ++ +
Sbjct: 266 YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = +3
Query: 258 VSKNAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 437
V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL ++G+ A + R
Sbjct: 30 VAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYR 88
Query: 438 YFPTQALNFAFKDKYKQVFL 497
FP + F ++ ++V +
Sbjct: 89 VFPYAGIKFVAYEQVRRVLI 108
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 35.5 bits (78), Expect = 0.006
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 273 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 452
V P+ ++ LQ Q S A Y G +D F + K +G ++G N+++ P+
Sbjct: 353 VFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPSV 409
Query: 453 ALNFAFKDKYKQ 488
A+++ + K+
Sbjct: 410 AISYLVYENCKK 421
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/83 (20%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 AVSKNAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFANV 431
+V++ + P++ +K +Q +S+ Q K I+ + + + K G+ ++RG +
Sbjct: 240 SVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLVGI 295
Query: 432 IRYFPTQALNFAFKDKYKQVFLG 500
+ FP A + + K+ ++G
Sbjct: 296 LGMFPYSATDLGTFEGLKRTWIG 318
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 34.3 bits (75), Expect = 0.014
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +3
Query: 270 AVAPIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 440
AVA I V L L V Q++ + Y G D +I K +G +RG ++
Sbjct: 16 AVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILME 75
Query: 441 FPTQALNFAFKDKYKQVF 494
P +AL FA D Y +++
Sbjct: 76 APKRALKFASNDTYSKLW 93
Score = 31.5 bits (68), Expect = 0.097
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 273 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 449
V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVW 174
Query: 450 QALNFAFKDKYK 485
A F K +
Sbjct: 175 NAGYFGVIQKIR 186
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 30.7 bits (66), Expect = 0.17
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +3
Query: 279 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 458
PI+ VK +Q ++A + YK + +I + GLL FW G + R + +
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGI 276
Query: 459 NFAFKDKYKQV 491
F +K ++
Sbjct: 277 VFTVYEKVMEI 287
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 29.9 bits (64), Expect = 0.29
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 321 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 464
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 333 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 431
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
Score = 26.6 bits (56), Expect = 2.7
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +3
Query: 261 SKNAVAPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANV 431
S VAP++ VK Q Q + G + + I +G+ +RG +
Sbjct: 19 SSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMM 78
Query: 432 IRYFPTQALNFAFKDKYKQVFLGGVERR 515
+ Y P+ ++ F +K K +F GV ++
Sbjct: 79 LGYLPSWSIYFVVYEKCKVLF--GVNKK 104
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -1
Query: 553 PEPDYQEVTPELRLLSTPPRNTCLYLSLKAKLSAWVGKYL-MTLAKLPRQNERRPCS 386
P+P Y + P+L +++ N+ + ++ AK+ V KY+ T +L +Q + P S
Sbjct: 156 PKPRYFRLKPDLSVINRYGFNSIGHDAILAKIQKRVRKYIAKTSPQLLKQFDANPAS 212
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 499 AALKEDAVLALLPGNLAPVVPPEPPL 576
++LKE + LA G+ APV P EP L
Sbjct: 300 SSLKEQSSLATRMGSPAPVYPSEPHL 325
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 228 GLPGWRYLRAVSKNAVAPIERVKLLL 305
G+PG RYLR ++K V P+ + L+L
Sbjct: 370 GIPGSRYLRLLTKQKV-PLNAILLVL 394
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 69 YEITPNLLFKNQELVFRDPPSACAATPTSTY 161
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 571 VAPAAPPEPDYQEVTPELRLLSTPP 497
V+P PE Y+++ PEL+ L+ P
Sbjct: 1186 VSPPTDPEVRYEDIQPELQHLAGTP 1210
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 357 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 449
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 373 TKASTIPL*RWSAAICLLTCCTWSSSLTRSIGAT 272
T+ + + + WSA I +LT C SLT S+ T
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLT 566
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = +2
Query: 212 RSRSLRTSWLAVSPRRLQERRSTNRACQAAAPSTARQQADRRRPALQGYRRRLRPHPQ 385
RS+++ ++ SPR R + + + ++D P LQG ++P P+
Sbjct: 87 RSKNIPDQYIGRSPRPTSHRHAEEKEVDN------KTKSDETNPVLQGSATEIKPQPR 138
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 273 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 416
V P+E V++ LQ+Q K + Y G D +I + GL +G
Sbjct: 130 VGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGLSGIMKG 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,737
Number of Sequences: 5004
Number of extensions: 51786
Number of successful extensions: 188
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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