Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20172
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   163   9e-43
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   163   9e-43
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   1.7  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   9.2  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  163 bits (397), Expect = 9e-43
 Identities = 78/115 (67%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
 Frame = +3

Query: 255 AVSKNAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 434
           A+SK  VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVI
Sbjct: 22  AISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVI 81

Query: 435 RYFPTQALNFAFKDKYKQVFLGGVERR-RXXXXXXXXXXXXXXXXXXXLCFVYPL 596
           RYFPTQALNFAFKDKYKQVFLGGV++  +                   LCFVYPL
Sbjct: 82  RYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPL 136



 Score = 42.7 bits (96), Expect = 3e-06
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = +1

Query: 193 MSNLADPVAFAKDFLAGGISAPSPRT 270
           MS LADPVAFAKDFLAGG++A   +T
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKT 26



 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 279 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 437
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 339 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 476
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  163 bits (397), Expect = 9e-43
 Identities = 78/115 (67%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
 Frame = +3

Query: 255 AVSKNAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 434
           A+SK  VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVI
Sbjct: 22  AISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVI 81

Query: 435 RYFPTQALNFAFKDKYKQVFLGGVERR-RXXXXXXXXXXXXXXXXXXXLCFVYPL 596
           RYFPTQALNFAFKDKYKQVFLGGV++  +                   LCFVYPL
Sbjct: 82  RYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPL 136



 Score = 42.7 bits (96), Expect = 3e-06
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = +1

Query: 193 MSNLADPVAFAKDFLAGGISAPSPRT 270
           MS LADPVAFAKDFLAGG++A   +T
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKT 26



 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 279 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 437
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 339 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 476
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 588 TRSTERWLRRHHRSQITRK*RQNCVFF 508
           T  T +WL+ + R  +  K   NCV F
Sbjct: 198 TDMTAQWLKENSRLALKPKDVSNCVLF 224


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 499 AALKEDAVLALLPGNLAPVVPPEP 570
           A L+ +A     PGN  P+  P+P
Sbjct: 30  ARLRREAKPEAEPGNNRPIYIPQP 53


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 118 VIPHPRVPQLPPRHIHLVKIT 180
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,464
Number of Sequences: 438
Number of extensions: 4064
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)