Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20171
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0330 + 2325504-2325739,2326749-2327622                           30   1.6  
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545...    29   3.6  
08_01_0639 + 5544411-5544413,5545000-5545343,5546420-5546849           29   3.6  
05_07_0255 + 28703799-28705703                                         28   6.3  

>02_01_0330 + 2325504-2325739,2326749-2327622
          Length = 369

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 529 SRSFNQPYLEDHPSTRHISYSTSCLHQ-RHHRELSN 425
           SR+   P L+DH   R  SY     HQ R+HR +++
Sbjct: 285 SRALQHPLLKDHLINRRSSYGRDKYHQARYHRNVAS 320


>11_01_0669 -
           5454116-5454153,5454569-5454770,5454865-5455029,
           5455278-5456183
          Length = 436

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 411 SVENSLLSSRWCRWWRHDVE*EICRVEGWSSR 506
           +V   +L+ RW   W H     +  VEGW+ R
Sbjct: 42  AVRTCVLARRWRHLWEHAPALRVTDVEGWNPR 73


>08_01_0639 + 5544411-5544413,5545000-5545343,5546420-5546849
          Length = 258

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 304 AFSIWTGRSMLLYKPIDT-SHVQRRCYGMLVARAIRGVLKIRYLVLGGAV 450
           A ++ TG+S    K  +  +  +R CYG  V   I  V  +++L+LGG +
Sbjct: 161 ALNVITGKSFPQLKRFELRTAFERPCYGCDVPLGIPTVRHLQHLILGGII 210


>05_07_0255 + 28703799-28705703
          Length = 634

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 371 LCTWLVSIGL-YSSMLRPVHIENATARLSMLTHDVFLNDDLHDYVVFWTLFILVY 210
           L T  V+ GL + +M+R   I+      SML  D+  +  + D VV WT  I+ Y
Sbjct: 354 LHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADIVFSHRVKDDVVSWTAMIVGY 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,628,945
Number of Sequences: 37544
Number of extensions: 323180
Number of successful extensions: 814
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)