Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20171
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12629| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_6741| Best HMM Match : WD40 (HMM E-Value=0)                         28   4.9  
SB_48967| Best HMM Match : SCP (HMM E-Value=8.3e-06)                   27   8.5  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   8.5  

>SB_12629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 371 LCTWLVSIGL--YSSMLRPVHIENATARLSMLTHDVFLND 258
           +CTWL SIGL  YS + R   I+     LS +T +V L D
Sbjct: 331 VCTWLESIGLAQYSEVFRNNAIDG--HELSNMTGNVLLTD 368


>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 714

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 371 LCTWLVSIGL--YSSMLRPVHIENATARLSMLTHDVFLND 258
           +CTWL SIGL  YS + R   I+     LS +T +V L D
Sbjct: 613 VCTWLESIGLAQYSEVFRNNAIDG--HELSNMTGNVLLTD 650


>SB_48967| Best HMM Match : SCP (HMM E-Value=8.3e-06)
          Length = 139

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 534 RGAGHLTSPIWKTILPLG 481
           RG GH T  +WKT   LG
Sbjct: 75  RGTGHFTQVVWKTSTELG 92


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 423  NFQHSSNSPCNKHTIASSLHMARIYWFVQ*HATSSPY 313
            N+  S N     HT +S+ H+++ +W    H T  PY
Sbjct: 974  NYLPSDNCEVCHHTFSSAEHVSKHFWTA--HVTKRPY 1008


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,590,755
Number of Sequences: 59808
Number of extensions: 385082
Number of successful extensions: 919
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)