Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20171
(585 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z92775-3|CAB62778.2| 396|Caenorhabditis elegans Hypothetical pr... 30 1.4
AB070577-1|BAC66472.1| 396|Caenorhabditis elegans L-3,4-dihydro... 30 1.4
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81050-10|CAB02860.1| 329|Caenorhabditis elegans Hypothetical p... 29 3.2
U41107-11|AAC71161.1| 454|Caenorhabditis elegans Hypothetical p... 27 7.4
U41107-10|AAN39669.1| 416|Caenorhabditis elegans Hypothetical p... 27 7.4
U41107-9|AAK73877.1| 471|Caenorhabditis elegans Hypothetical pr... 27 7.4
U41107-8|AAN39670.1| 468|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z92973-1|CAB07493.2| 323|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical
protein D2013.5 protein.
Length = 934
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 310 SIWTGRSMLLYKPIDTSHVQ-RRCYGMLVARAIRGVLKIRYLVLGGAVGGGMTLNKKYAE 486
++++ + LL K ++Q R + + A A R +LK+RY + G +GG + Y E
Sbjct: 46 ALFSKKGGLLQKRQTVINLQSERAFIGIAASAARHLLKLRYFIATGVIGGSVAARTWYEE 105
Query: 487 WKDGLPD 507
WK LPD
Sbjct: 106 WKSNLPD 112
>Z92775-3|CAB62778.2| 396|Caenorhabditis elegans Hypothetical
protein C06H5.7 protein.
Length = 396
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 340 YKPIDTSHVQRRCYGMLVARAIRGVL 417
YK I T V R+CY +L+ RAI L
Sbjct: 61 YKAIKTRRVSRKCYALLMNRAIGDAL 86
>AB070577-1|BAC66472.1| 396|Caenorhabditis elegans
L-3,4-dihydroxyphenylalanine receptorprotein.
Length = 396
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 340 YKPIDTSHVQRRCYGMLVARAIRGVL 417
YK I T V R+CY +L+ RAI L
Sbjct: 61 YKAIKTRRVSRKCYALLMNRAIGDAL 86
>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
protein C34F6.9 protein.
Length = 1181
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -3
Query: 535 SGSRSFNQPYLEDHPSTRHISYSTSCLHQRHHRELSNE 422
S SR + P+ E+ PST+ +ST +++ R +SNE
Sbjct: 803 SSSRRSSAPFSEESPSTKKTRFSTRV--EQYSRRVSNE 838
>Z81050-10|CAB02860.1| 329|Caenorhabditis elegans Hypothetical
protein C50B6.12 protein.
Length = 329
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 326 RPVHIENATARLSMLTHDVFLNDDLHDYVVFWTLFILVY 210
RP HI N L+ +H + D L+ FWT+FI +Y
Sbjct: 60 RP-HIHNFNGSLTYFSHTILSEDFLY----FWTIFIDIY 93
>U41107-11|AAC71161.1| 454|Caenorhabditis elegans Hypothetical
protein F55C12.1a protein.
Length = 454
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 395 ATSIP*HLLCTWLVSIGLYSSMLRPVHIENATARLSMLTHDVFL 264
+++I L TW + L+ S L P +NA ++ + T FL
Sbjct: 388 SSTIGTQFLVTWHATFSLFFSFLHPCDFQNALLQMFLCTISSFL 431
>U41107-10|AAN39669.1| 416|Caenorhabditis elegans Hypothetical
protein F55C12.1c protein.
Length = 416
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 395 ATSIP*HLLCTWLVSIGLYSSMLRPVHIENATARLSMLTHDVFL 264
+++I L TW + L+ S L P +NA ++ + T FL
Sbjct: 350 SSTIGTQFLVTWHATFSLFFSFLHPCDFQNALLQMFLCTISSFL 393
>U41107-9|AAK73877.1| 471|Caenorhabditis elegans Hypothetical
protein F55C12.1b protein.
Length = 471
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 395 ATSIP*HLLCTWLVSIGLYSSMLRPVHIENATARLSMLTHDVFL 264
+++I L TW + L+ S L P +NA ++ + T FL
Sbjct: 405 SSTIGTQFLVTWHATFSLFFSFLHPCDFQNALLQMFLCTISSFL 448
>U41107-8|AAN39670.1| 468|Caenorhabditis elegans Hypothetical
protein F55C12.1d protein.
Length = 468
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 395 ATSIP*HLLCTWLVSIGLYSSMLRPVHIENATARLSMLTHDVFL 264
+++I L TW + L+ S L P +NA ++ + T FL
Sbjct: 402 SSTIGTQFLVTWHATFSLFFSFLHPCDFQNALLQMFLCTISSFL 445
>Z92973-1|CAB07493.2| 323|Caenorhabditis elegans Hypothetical
protein Y6G8.1 protein.
Length = 323
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 87 NIFCYILQTSYVYYVITFSEPVKVMK 164
N FC++++TSY +VI + +MK
Sbjct: 62 NHFCFLVKTSYFLFVILLIDSTLLMK 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,176,698
Number of Sequences: 27780
Number of extensions: 302444
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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