Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20171
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containi...    28   4.0  
At2g02450.2 68415.m00185 no apical meristem (NAM) family protein...    28   4.0  
At2g02450.1 68415.m00184 no apical meristem (NAM) family protein...    28   4.0  
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom...    28   5.3  
At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi...    27   7.0  

>At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 721

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 161 HNLNRFRKGNHVIHIRSL*YVTKNINVYLYNAINCIFIKKSRI 33
           H +N + K   + + R+  Y T+  NV+ YN I   + K S+I
Sbjct: 48  HFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKI 90


>At2g02450.2 68415.m00185 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain
          Length = 414

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 23/59 (38%), Positives = 29/59 (49%)
 Frame = -3

Query: 538 LSGSRSFNQPYLEDHPSTRHISYSTSCLHQRHHRELSNEFSTLL**PLQQAYHSIFSAH 362
           +S  R + +P +EDHPS    S ST     RHH   S+  S L     QQ +HS  S H
Sbjct: 190 ISLCRVYKRPGVEDHPSVPR-SLST-----RHHNHNSSTSSRLA--LRQQQHHSSSSNH 240


>At2g02450.1 68415.m00184 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain
          Length = 379

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 23/59 (38%), Positives = 29/59 (49%)
 Frame = -3

Query: 538 LSGSRSFNQPYLEDHPSTRHISYSTSCLHQRHHRELSNEFSTLL**PLQQAYHSIFSAH 362
           +S  R + +P +EDHPS    S ST     RHH   S+  S L     QQ +HS  S H
Sbjct: 190 ISLCRVYKRPGVEDHPSVPR-SLST-----RHHNHNSSTSSRLA--LRQQQHHSSSSNH 240


>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to
           HGF-regulated tyrosine kinase substrate [Mus musculus]
           GI:1089781; contains Pfam profiles PF00790: VHS domain,
           PF03127: GAT domain
          Length = 607

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 326 RPVHIENATARLSMLTHDVFLNDDL 252
           R VH+ N+T+  SML   + LNDDL
Sbjct: 227 RVVHLVNSTSDESMLCQGLALNDDL 251


>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 939

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 486 LGIFLIQRHASTNGTTEN*VTNFQHSSNSPCNKHTIASSLHMAR 355
           L +FL    AST    E+  T    SS S  N+++ +SSLH+ +
Sbjct: 2   LHLFLFSSAASTTTAVEDNSTTMPPSSRSAANQNS-SSSLHLCK 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,019,891
Number of Sequences: 28952
Number of extensions: 267210
Number of successful extensions: 570
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)