Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20170
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I5I2 Cluster: Putative uncharacterized protein; n=3; ...    33   7.3  
UniRef50_A1WQZ8 Cluster: Succinate dehydrogenase, flavoprotein s...    32   9.7  

>UniRef50_Q8I5I2 Cluster: Putative uncharacterized protein; n=3;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 4494

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 47   SRFVVTL*VNLTLNKNYEIYRAFFSSDIGANRGINKCFGLKASETK 184
            S +V T+ +N  L K   IY+ F+   +   +G NKC+ +K  E K
Sbjct: 2558 SDYVNTVFINYNLAKG--IYKEFYKYSLKNRKGNNKCYSIKGEEKK 2601


>UniRef50_A1WQZ8 Cluster: Succinate dehydrogenase, flavoprotein
           subunit; n=1; Verminephrobacter eiseniae EF01-2|Rep:
           Succinate dehydrogenase, flavoprotein subunit -
           Verminephrobacter eiseniae (strain EF01-2)
          Length = 601

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 428 QKCFGRHTYY-YDHPESSPTVPLSTKFSQ*FEYSV 327
           ++C G HT + Y+HP+  PT PL    +Q  ++S+
Sbjct: 537 KECRGAHTVHDYEHPDDHPTAPLGRNDAQWLKHSL 571


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,921,372
Number of Sequences: 1657284
Number of extensions: 9501950
Number of successful extensions: 17747
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17744
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)