Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20170
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    27   2.2  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    25   6.7  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   8.9  

>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 415 DDTHIIMITLNLHLQFLYLQNSLSNLSTQ*VSL*KWCNSRSGVE 284
           +D H +   L+L    L + NS+ ++  +  +L +W  SRS V+
Sbjct: 211 EDRHGVYCVLSLMENLLSVDNSICSIIVENTTLVEWLLSRSSVD 254


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 446 YTWYCVQKCFGRHTY 402
           Y W C+QKCF    Y
Sbjct: 109 YVWDCLQKCFDAKLY 123


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 416 GRHTYYYDHPESSPTVPLSTK 354
           G  TY++DH   +P VP + K
Sbjct: 116 GFKTYFFDHLVHTPLVPFAVK 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,971
Number of Sequences: 5004
Number of extensions: 44049
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)