Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20170
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40860.1 68415.m05044 protein kinase family protein / protein...    30   1.4  
At1g31470.1 68414.m03853 nodulin-related weak similarity to nodu...    28   5.8  
At5g40700.1 68418.m04940 expressed protein predicted protein, Ar...    27   7.7  
At2g44400.1 68415.m05522 DC1 domain-containing protein  similar ...    27   7.7  

>At2g40860.1 68415.m05044 protein kinase family protein / protein
           phosphatase 2C ( PP2C) family protein contains Pfam
           PF00481: Protein phosphatase 2C domain; contains Pfam
           PF00069: Protein kinase domain; similar to partner of
           PIX 1 (GI:21702695) [Homo sapiens]
          Length = 658

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/76 (31%), Positives = 39/76 (51%)
 Frame = -1

Query: 577 LKFVCNSNLCGNTGLKLLAACANPPSFLQIVDYSFPHGCKFH*VIHGIVFKNALDDTHII 398
           L+  CN N  G    KLLAA A PP+++   D+ +  G      +H   +  ++D   ++
Sbjct: 74  LQLSCNLNHPGVA--KLLAAHAKPPNYMFFFDF-YESGTLAE-KLHVEEWSPSID--QVL 127

Query: 397 MITLNLHLQFLYLQNS 350
           +ITL+L     YL N+
Sbjct: 128 LITLHLAKALQYLHNN 143


>At1g31470.1 68414.m03853 nodulin-related weak similarity to
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 546

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -2

Query: 471 PMVVSFIKLYMVLCSKMLWTTHILL*SP*IFTYSSSIYKILSVI*VLSKFH 319
           P+VVSF  LY VL    L TT           + S ++ IL+V+ V++ FH
Sbjct: 175 PLVVSFAALYPVLTKPSLDTTP----DYDSRRHDSHVFTILNVLAVITSFH 221


>At5g40700.1 68418.m04940 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 302

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 428 EHNTMYNLMKLTTMGE*IVDNLQEGRWIS 514
           E NTM+ L +  + G  + +NL+ G+W S
Sbjct: 24  EDNTMHALSQSVSFGRFMTENLEWGKWSS 52


>At2g44400.1 68415.m05522 DC1 domain-containing protein  similar to
           GP|2435515|AF024504
          Length = 146

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 550 CGNTGLKLLAACANPPSFLQIVDYSFPH 467
           CG+ G+ L   CAN PS  ++   S PH
Sbjct: 72  CGDCGIDLHTVCANMPS--RVTHQSHPH 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,599,577
Number of Sequences: 28952
Number of extensions: 216755
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)