Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20168
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338...    28   6.0  

>10_01_0307 +
           3382432-3382608,3382690-3382863,3383600-3383695,
           3384640-3384709,3385878-3386002,3387128-3387268,
           3387362-3387519,3387644-3387803,3390136-3390213,
           3390326-3390385,3390473-3390528,3391886-3392090,
           3394107-3394192,3394296-3394406,3394536-3394607,
           3395453-3395538,3395730-3395878,3396107-3396250,
           3396335-3396442,3396997-3397027,3397609-3397713,
           3398283-3398407,3398807-3398950,3399073-3399177,
           3400748-3400799,3401549-3401696,3401936-3402130,
           3402404-3402647,3403152-3403259,3403887-3404034,
           3405467-3405525,3405876-3405945,3407008-3407333,
           3407666-3409204,3410526-3410733,3410870-3410906,
           3411024-3411072,3411143-3411271
          Length = 2025

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 216 RFKNNLSIVDLFLNLDRSFSLNAALNAF-Y*IIYLDNSL-SIILHISKNNCYLLEHKYVQ 389
           R+K  L + DL  +  +  S ++ L    + I+  D+S+ S++LHI   +  LLEH +  
Sbjct: 662 RWKITLKVFDLVKSCIQVKSFSSKLGGIIWEILLYDSSIHSVLLHILSMSTQLLEHSHGS 721

Query: 390 IPH 398
             H
Sbjct: 722 YCH 724


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,066,870
Number of Sequences: 37544
Number of extensions: 231607
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)