Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20168
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    25   0.89 
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    23   3.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.3  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 421 HIRKQ*FKCGICTYLCSNK 365
           H   + FKC  C+Y C NK
Sbjct: 11  HFGSKPFKCEKCSYSCVNK 29


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 49  LNKYCNKFQNSVY 11
           + KYC  ++NS+Y
Sbjct: 63  MKKYCETYKNSIY 75


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +3

Query: 249 FLNLDRSFSLNAALNAFY*IIYLDNSLSIILHISKNNCYLLEHKYVQIPH-LNYCF 413
           FL   R + LN     F+  I  D  +   + I     Y   HK ++IP  L Y +
Sbjct: 486 FLIKIRQYRLNHKPFNFHITINADKPMKAAIRIFIGPKYDSHHKLIEIPEDLKYFY 541


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +3

Query: 249 FLNLDRSFSLNAALNAFY*IIYLDNSLSIILHISKNNCYLLEHKYVQIPH-LNYCF 413
           FL   R + LN     F+  I  D  +   + I     Y   HK ++IP  L Y +
Sbjct: 486 FLIKIRQYRLNHKPFNFHITINADKPMKAAIRIFIGPKYDSHHKLIEIPEDLKYFY 541


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,104
Number of Sequences: 438
Number of extensions: 3424
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)