Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20167
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    32   0.080
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   0.98 
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    28   1.7  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    26   5.2  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    26   5.2  
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    26   5.2  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   9.2  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   9.2  

>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 32.3 bits (70), Expect = 0.080
 Identities = 18/65 (27%), Positives = 35/65 (53%)
 Frame = +3

Query: 6   RGPVNHLPLNCLNR*PAKHLLTKSQVQKKVISLQVPRAVMAESQTMLKKTKHSDLALVAT 185
           R  V+  PL+ L+       L+K  + K ++SLQ  +A++A S +++  ++HS L +   
Sbjct: 149 RETVSTCPLSFLSYSTGVERLSKELILKDLLSLQFQQALLAISPSVIVTSEHSPLVMFQA 208

Query: 186 AAKYM 200
              Y+
Sbjct: 209 INPYL 213


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 8    RPSESPSTELPKPITSETPIDEIAGPE-ESNFPPSASSGY 124
            RP   PS E+P+P  + T + E+  PE   +  P  +S Y
Sbjct: 1217 RPILLPSFEIPEPCNTATSVQELINPEINQDDSPIVASRY 1256


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +2

Query: 515 IRPMFTLHMRRRRSNEMRSKSVHSRADAKTNDSGSCFS*TTKMNIFRRFT 664
           IR +  L +  R ++ + SK   ++  +K N +G+  +   K+N+FR FT
Sbjct: 100 IRSLAFLKLCVRHNSTVPSKDEQAQDISKINTNGTLQTPNKKVNVFRLFT 149


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 124 ITARGTWREITFFWTCDFVNRCFAGYRFRQF 32
           +T +GT+  +  +   DFVN+C  GY F  F
Sbjct: 619 VTNKGTYDFL--YLRIDFVNKCNVGYAFINF 647


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -3

Query: 754 MYEHITCIEE*THFFLTK---VYYPCEGSFETIGKTSKNVHL 638
           + E  TCI E      TK   +Y+ C G+F+T  K +   HL
Sbjct: 102 LLEQCTCIAESFEGIYTKKQILYFKCYGTFKTWKKIANFPHL 143


>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 684 KALSRQLVKRRKMFIFVV*LKQLPLSFVLASAL 586
           KALS  L+   K + F+V ++ LP+S    S+L
Sbjct: 81  KALSNHLLYSSKNYSFIVNIRALPISTPYGSSL 113


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +3

Query: 402 NNHI----TSSFPYPPI*GRSSKKRMSNKRTHL 488
           NNHI    TSS P  P+ G+SS    S    HL
Sbjct: 155 NNHILHKNTSSHPSSPVNGKSSDIHKSQSYQHL 187


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 345 RVSCIDGDYTQCNHHDYNNNN 407
           R+  +D D     HHDY N+N
Sbjct: 107 RIMGMDIDIVNLRHHDYTNSN 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,539
Number of Sequences: 5004
Number of extensions: 69239
Number of successful extensions: 221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)