Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20167
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0072 + 8839223-8839720 31 1.0
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 31 1.3
11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688... 30 1.8
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 30 1.8
02_01_0610 + 4564016-4564018,4564166-4564243,4564764-4564788,456... 29 4.1
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 29 4.1
01_01_0581 - 4312971-4313126,4314047-4314319,4314402-4314713 29 4.1
12_02_1210 + 27021592-27021616,27021835-27022256 29 5.4
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 29 5.4
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 29 5.4
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 28 7.2
04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103 28 9.5
>10_05_0072 + 8839223-8839720
Length = 165
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 11 PSESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYG 127
P + PKP E P + +E PPS+S G+G
Sbjct: 87 PPAAGDAAAPKPAAEEPPKEPAPAEKEEGKPPSSSEGFG 125
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +2
Query: 71 EIAGPEESNFPPSASSGYGGEPDYVEEDQAFGPGTCRYGGKVYVSAQQIPRDDP 232
++ P + +F P + GY G P Y + + G T SA Q P+ P
Sbjct: 492 QLPPPSQGSFGPPSKGGYAGPPQYAPQGSSHGYNTAYGYPPSGPSAAQAPQMPP 545
>11_06_0014 -
19267601-19267831,19268338-19268454,19268733-19268890,
19269501-19269612,19269721-19269908,19270344-19270436,
19270521-19270708,19271635-19271720,19272662-19272811,
19273930-19274065,19274143-19274222,19275546-19275626,
19276114-19276245,19276490-19276610,19277457-19277518,
19277846-19277974,19278514-19278573,19278689-19278772,
19278852-19279532
Length = 962
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -3
Query: 661 KTSKNVHLRRLAETAAAIICLSIGSGVHAFGSHFI*PSPPHVQC 530
+ S++ H+ ++ +AAA C S+ S +H+ G HF P ++C
Sbjct: 636 RLSRSSHMENVSLSAAA--CRSLSSAIHSCGQHFQILLPKVLEC 677
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +2
Query: 11 PSESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYG-GEPDY 142
P+ PS + P P + P I P N PPS G G G P Y
Sbjct: 160 PALLPSVQAPAPSVARNPNLPIVQPPSVNNPPSRPIGSGNGVPPY 204
>02_01_0610 +
4564016-4564018,4564166-4564243,4564764-4564788,
4564870-4564902,4565034-4565155,4565230-4565360,
4565509-4565732,4565824-4566065,4566268-4566357
Length = 315
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +2
Query: 41 KPITSETPIDEIAGPEESNFPPSASSGYGGEPDYVEEDQAFGPGTCRYGGKVYVSAQQIP 220
K +++ +P A S P +AS+ E FGPG R + ++ P
Sbjct: 233 KDVSASSPAKRQANATNSVQPSTASTSQSSSSRKTTEKLVFGPGGNRTSKETEKVPEKEP 292
Query: 221 RDDP 232
++DP
Sbjct: 293 KEDP 296
>01_07_0290 -
42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = -2
Query: 323 CIGSS*HPCMGGGQLCCKQIISLGSRSKNHRDHL*EFVGLIHILCRRSDKCQVRMLGLLQ 144
C+ S H C G CC + G+ + L + L+H +C R +K GL++
Sbjct: 695 CLSKSLHRCCGSTN-CCNPLEEYGTVRSSIYHGLNPYEALLHSICER-EKIMRASKGLVE 752
Query: 143 HSLALRHNRSR 111
++ SR
Sbjct: 753 PGSLFKNMMSR 763
>01_01_0581 - 4312971-4313126,4314047-4314319,4314402-4314713
Length = 246
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/33 (30%), Positives = 13/33 (39%)
Frame = -3
Query: 136 WLSAITARGTWREITFFWTCDFVNRCFAGYRFR 38
W TW + +W C FV A + FR
Sbjct: 199 WAYVNNRHNTWEQFYVYWICPFVGAVLAAWVFR 231
>12_02_1210 + 27021592-27021616,27021835-27022256
Length = 148
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Frame = +2
Query: 11 PSESPSTELPKPITSETPIDE------IAG-----PEESNFPPSASSGYGGEPDYVEEDQ 157
P+ ++ LP PI P++ + G P S + +A G GG Y
Sbjct: 46 PAAEVASALPVPIPDGNPVEGAFTNGGLGGNQAFFPGSSGYGTAAGLGAGGFGPY--GGY 103
Query: 158 AFGPGTCRYGGKVYVSAQQIPRDDPCDFCFCFLVIL 265
GPGT Y G +Y + P C V+L
Sbjct: 104 GGGPGTYGYNGPLYFGSAPTRTGSPAGSCAAAAVLL 139
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 17 ESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYGGEPDYVE-EDQAFGPGTCRYGGK 193
++P+ P+ + S P +A P + PP SGY P Y +GP YGG
Sbjct: 142 DAPAHRRPEIVRSAAP--PVAPPPQMGPPPPYGSGYAPPPPYGSGYGYGYGPAP-DYGGG 198
Query: 194 VYVS 205
+ V+
Sbjct: 199 MAVA 202
>02_05_0101 - 25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 5 TRPSESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYGGEPDYVEEDQAFGPGTCRY 184
+R S SP +P+ S + I N PP S Y G+ D DQ+ GT Y
Sbjct: 1922 SRCSNSPGMSIPRMRDSNSKI--------LNPPPKESFRYRGDRDTPSRDQSPSIGTQHY 1973
Query: 185 G-GKVYVSAQ 211
G GK AQ
Sbjct: 1974 GKGKEGAKAQ 1983
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +2
Query: 2 GTRPSESPSTELPKPITSETPIDEIAGPEESNFPPSASS 118
GT PS S S L P + P+D A S+ PPS SS
Sbjct: 84 GTPPSGS-SPVLTLPPSPAKPVDASAAAARSSLPPSPSS 121
>04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103
Length = 301
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 14 SESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYGGEPDYVE 148
++ + ELP+ + D+ A P+ S + +GYGG +V+
Sbjct: 6 ADDGADELPRTASHPFDADDDAAPDASGGAAADDTGYGGYASFVD 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,567,305
Number of Sequences: 37544
Number of extensions: 512276
Number of successful extensions: 1493
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -