Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20167
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014940-7|AAB63939.2|  135|Caenorhabditis elegans Hypothetical ...    34   0.13 
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    30   2.1  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    30   2.1  
AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical...    29   2.8  
AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical...    29   2.8  
Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical...    29   3.7  
AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical...    29   3.7  
Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AL034365-3|CAA22261.1|  563|Caenorhabditis elegans Hypothetical ...    29   4.9  
AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical ...    28   8.6  
AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm rec...    28   8.6  

>AF014940-7|AAB63939.2|  135|Caenorhabditis elegans Hypothetical
           protein W02D7.8 protein.
          Length = 135

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 22/53 (41%), Positives = 29/53 (54%)
 Frame = +2

Query: 11  PSESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYGGEPDYVEEDQAFGP 169
           PS S S E+PKPI+S       A P   +FPPS +S   GE  + +E  A+ P
Sbjct: 3   PSTSSSVEIPKPISSPRRTLPEAPPSYYDFPPSYTS--NGE-TFTDELPAYCP 52


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 5    TRPSESPSTELPKPIT-SETPIDEIAGPEESNFPPSASSGYGGEPDYVEEDQAFGPGTCR 181
            T PS SP++    P + S +P      P   ++ P++ S     P Y     ++ P + R
Sbjct: 1615 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPR 1674

Query: 182  Y 184
            Y
Sbjct: 1675 Y 1675


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 5    TRPSESPSTELPKPIT-SETPIDEIAGPEESNFPPSASSGYGGEPDYVEEDQAFGPGTCR 181
            T PS SP++    P + S +P      P   ++ P++ S     P Y     ++ P + R
Sbjct: 1622 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPR 1681

Query: 182  Y 184
            Y
Sbjct: 1682 Y 1682


>AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17b protein.
          Length = 497

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +2

Query: 2   GTRPSESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYGGEP 136
           G +P+E PS E PK   S TP      P+E++ P  ASS +G  P
Sbjct: 248 GKKPAE-PSEE-PKAADS-TPKLTFGSPKEADLPKPASSLFGASP 289


>AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17a protein.
          Length = 512

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +2

Query: 2   GTRPSESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYGGEP 136
           G +P+E PS E PK   S TP      P+E++ P  ASS +G  P
Sbjct: 263 GKKPAE-PSEE-PKAADS-TPKLTFGSPKEADLPKPASSLFGASP 304


>Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 336 PPIRVSCIDGDYTQCNHHDYNNNNHITSSFPYPP 437
           P I+  C+DG  T C+ H  N   H  +  P PP
Sbjct: 41  PVIQYCCVDG--TPCSDHQQNGVRHRKNPPPMPP 72


>Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13a protein.
          Length = 633

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 336 PPIRVSCIDGDYTQCNHHDYNNNNHITSSFPYPP 437
           P I+  C+DG  T C+ H  N   H  +  P PP
Sbjct: 41  PVIQYCCVDG--TPCSDHQQNGVRHRKNPPPMPP 72


>AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 336 PPIRVSCIDGDYTQCNHHDYNNNNHITSSFPYPP 437
           P I+  C+DG  T C+ H  N   H  +  P PP
Sbjct: 41  PVIQYCCVDG--TPCSDHQQNGVRHRKNPPPMPP 72


>AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13a protein.
          Length = 633

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 336 PPIRVSCIDGDYTQCNHHDYNNNNHITSSFPYPP 437
           P I+  C+DG  T C+ H  N   H  +  P PP
Sbjct: 41  PVIQYCCVDG--TPCSDHQQNGVRHRKNPPPMPP 72


>Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical
           protein T25B9.5 protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 14  SESPSTELPKPITSETPIDEIAGPEESNFPPSA 112
           S SPST   KP +SETP    + P     PP A
Sbjct: 508 SISPSTNSAKPPSSETPNTGSSSPNAPTPPPQA 540


>AL034365-3|CAA22261.1|  563|Caenorhabditis elegans Hypothetical
           protein Y69E1A.3 protein.
          Length = 563

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 14  SESPSTELPKPITSETPIDEIAGPEESNFPPSA 112
           S SPST   KP +SETP    + P     PP A
Sbjct: 530 SISPSTNSAKPPSSETPNTGSSSPNAPTPPPQA 562


>AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical
           protein C51F7.1 protein.
          Length = 947

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +2

Query: 2   GTRPSESPSTELPKPITSET-PID-EIAGPEESNFPPSA 112
           G + S SP  +    +T+ T P+  EIAG  +++FPP++
Sbjct: 726 GPKTSSSPPPQSQPSLTASTGPLPAEIAGDRQASFPPAS 764


>AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 211 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 700 VYYPCEGSFETIGKTSKNVHLRRLAETAAAIICLSIGSGVHAFGSHF 560
           +++  E +F  I  TS +   ++L E  A I C   GS +  F  HF
Sbjct: 65  IFHSFESTFMLIVDTSSSKVNKKLWEILAVIYCGFYGSSLAIFSIHF 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,728,251
Number of Sequences: 27780
Number of extensions: 420456
Number of successful extensions: 1538
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)