Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20166
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    25   6.4  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   6.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   6.4  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.5  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   8.5  

>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 369 LYSFGNCIL*SLQISNGFSLSLPTGVRR 452
           L   GNC+  S++I++  S S+P G ++
Sbjct: 229 LIILGNCLAPSIEIADSASASVPIGKKK 256


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 475 LSDELSVYLRTPVGRLKENPLEIWRDYKIQFPKLYKIAFK-YLTIVGTSVPSERL 314
           L  E    LRT   + K + L IW++  +  P +  ++ K Y  +V   + ++ L
Sbjct: 287 LGPETMQSLRTIERKAKISRLGIWKNISVSIPDINSLSLKDYSAVVSRVISTDTL 341


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 579 SDSDKSDKNEEAFSLWTDHHKLVHVTGKLTNLKT 478
           S S+K DKN  + +  T    + +   KLTN+++
Sbjct: 161 SSSNKKDKNTSSVTTLTSEEDVSYFQKKLTNMES 194


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 603  LHSNEEPESDSDKSDKNEEAF 541
            L+  +E  +DSDK +KNE AF
Sbjct: 1728 LNIYKETINDSDKKEKNETAF 1748


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 594 NEEPESDSDKSDKNEEAFSLWTDHHKLVHVT-GKLTNLK 481
           NEE E DS+++ ++EE  S+  +  +++  T   L NL+
Sbjct: 375 NEEDEEDSEETSESEEDESVNDEKPQVIDQTNASLVNLR 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,442
Number of Sequences: 5004
Number of extensions: 55962
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)