Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20166
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0333 + 3675806-3676001,3676783-3677783 30 1.2
08_02_0070 - 11897089-11898150,11898389-11898644,11898755-118990... 30 1.6
10_02_0077 - 4985493-4986388,4986731-4986926 29 2.1
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043... 29 2.8
11_06_0370 + 22768977-22769523,22769619-22770642,22770784-227711... 28 5.0
06_03_0992 - 26680555-26680840,26680893-26681279,26681364-266824... 28 5.0
04_04_1339 + 32760424-32760584,32762428-32764462 28 6.5
09_03_0002 - 11387119-11387780,11388756-11388954,11389033-113891... 27 8.7
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 27 8.7
06_03_0709 - 23759162-23759455,23759681-23759761,23759847-237599... 27 8.7
06_01_1190 + 10231166-10231222,10231318-10234122 27 8.7
>10_01_0333 + 3675806-3676001,3676783-3677783
Length = 398
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 6 RENIHRCFFRCDASIGHND--GNTMYWEVH 89
++NIH+C S+G+ D N ++W VH
Sbjct: 279 KDNIHQCLLNAFRSVGNTDPNWNDLFWAVH 308
>08_02_0070 -
11897089-11898150,11898389-11898644,11898755-11899059,
11899149-11899550
Length = 674
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -1
Query: 418 PLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQAGLVMTEQRNRLKGKRLANFCF 239
P+E W Y + P+L ++A + L+ +S +ER++ + +RN+L F
Sbjct: 583 PIEWWCSYGSETPELAEVAKRVLSQPISSSSAERIWGTYQFIHNAKRNKLNAANADKLVF 642
>10_02_0077 - 4985493-4986388,4986731-4986926
Length = 363
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 6 RENIHRCFFRCDASIGHND--GNTMYWEVH 89
++NIH+C S+G+ D N ++W VH
Sbjct: 246 KDNIHQCLLDAFQSVGNKDPNWNDLFWAVH 275
>12_02_0761 -
22901121-22901917,22902111-22902707,22904282-22904358,
22906543-22907135,22907552-22908118,22908431-22908958,
22909115-22909432,22910622-22910656,22910986-22911301
Length = 1275
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 528 DHHKLVHVTGKLTNLKTFCLTNFPFIS 448
DH+ + V G+L NL CL+ PF S
Sbjct: 655 DHNATIQVLGELRNLTILCLSREPFHS 681
>11_06_0370 +
22768977-22769523,22769619-22770642,22770784-22771170,
22771216-22771507
Length = 749
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 433 RLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQAGLVMTEQRNR 272
R N + W Y P+L K+A K L +S +ER +S G + + RN+
Sbjct: 589 RAHMNAKQWWGIYGNSAPELKKLALKLLGQPTSSSCAERNWSTYGFIHSSMRNK 642
>06_03_0992 -
26680555-26680840,26680893-26681279,26681364-26682441,
26682537-26683083
Length = 765
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 406 WRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQAGLVMTEQRNR 272
W Y P+L K+A K L +S +ER +S GL+ RN+
Sbjct: 616 WGIYGNSAPELKKLALKLLGQPTSSSCAERNWSTYGLIHNSMRNK 660
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = -1
Query: 508 RNWKI-NKSEDVLSDELSVYLRTPVGRLKENP-----LEIWRDYKIQFPKLY 371
R W NK+ ++ D L RT + K+ P LE+WRD ++ PK++
Sbjct: 101 RRWADHNKALQMIRDILMYMDRTFIATNKKTPVFDLGLELWRDIVVRTPKIH 152
>09_03_0002 -
11387119-11387780,11388756-11388954,11389033-11389106,
11389840-11390323,11390439-11390450
Length = 476
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -1
Query: 391 IQFPKLYKIAFKYLTIVGTSVPSERLFSQAGLVMTEQRNRLKGKRLANFCFYIALTKNI 215
I + +Y++ L I + ER+FS V + RNR+ G N C L ++I
Sbjct: 396 INYTLVYELLKLVLVIPVATTSVERVFSTMNYVKNKLRNRM-GNEYLNDCLVTFLKRDI 453
>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 361 FKYLTIVGTSVPSERLFSQAGLVMTEQRNRLKGKRLAN 248
F++L ++G VP++ F LV +EQ+N L++
Sbjct: 908 FEHLHLLGEGVPTDSSFLTVPLVESEQKNHKSSSGLSS 945
>06_03_0709 -
23759162-23759455,23759681-23759761,23759847-23759948,
23760068-23760163,23760256-23760315,23760496-23760549,
23760657-23760695,23761102-23761179,23761476-23761529,
23761797-23761880,23763447-23763475,23763602-23763659
Length = 342
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -1
Query: 517 VSARNWKINKSEDVLSDELSVYLRTPVGRLKENPL 413
+ AR W ++K+ D+L D L+ ++ + + E P+
Sbjct: 44 LKAREWHVSKACDMLVDSLNWRIQNEIDSILEKPI 78
>06_01_1190 + 10231166-10231222,10231318-10234122
Length = 953
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 519 KLVHVTGKLTNLKTFCLTNFPFISELLLED 430
KLV TG NL+T C+ + E+ ED
Sbjct: 792 KLVFKTGAFPNLRTLCIYELDQLREIRFED 821
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,681,229
Number of Sequences: 37544
Number of extensions: 285982
Number of successful extensions: 734
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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