Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20166
(604 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_785| Best HMM Match : hATC (HMM E-Value=0.13) 32 0.31
SB_24956| Best HMM Match : hATC (HMM E-Value=0.013) 32 0.41
SB_28134| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_9904| Best HMM Match : SMC_hinge (HMM E-Value=3.3) 31 0.72
SB_3166| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_24646| Best HMM Match : hATC (HMM E-Value=0.024) 31 0.95
SB_10213| Best HMM Match : hATC (HMM E-Value=0.024) 31 0.95
SB_6514| Best HMM Match : hATC (HMM E-Value=0.024) 31 0.95
SB_51068| Best HMM Match : hATC (HMM E-Value=0.024) 31 0.95
SB_48175| Best HMM Match : hATC (HMM E-Value=0.024) 31 0.95
SB_47422| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038) 31 0.95
SB_11985| Best HMM Match : hATC (HMM E-Value=0.022) 31 0.95
SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 30 1.3
SB_13614| Best HMM Match : hATC (HMM E-Value=0.45) 30 1.7
SB_38006| Best HMM Match : hATC (HMM E-Value=0.049) 29 2.2
SB_29307| Best HMM Match : hATC (HMM E-Value=0.054) 29 2.2
SB_57822| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_22805| Best HMM Match : hATC (HMM E-Value=0.00022) 29 3.8
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04) 29 3.8
SB_27538| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_14647| Best HMM Match : hATC (HMM E-Value=0.021) 28 6.7
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_785| Best HMM Match : hATC (HMM E-Value=0.13)
Length = 205
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -1
Query: 457 VYLRTPVGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQAGLVMTEQR 278
VY+ + +E ++ W D+K Q P K L + +S +ER+FS +Q+
Sbjct: 127 VYVSDVLINTEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNFAFNDQQ 186
Query: 277 NR 272
+
Sbjct: 187 EQ 188
>SB_24956| Best HMM Match : hATC (HMM E-Value=0.013)
Length = 152
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 65 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASAVMKVLLVQPSSAAAERVFSV 124
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 125 LNSAFNDQQ 133
>SB_28134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 31.1 bits (67), Expect = 0.72
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Frame = -1
Query: 502 WKINKSEDV--LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVG 338
W+ N + L EL YL V +E ++ W D+K Q P K L
Sbjct: 269 WECNDDRIINGLIAELPAYLAATADVVINTEERKVKWWHDHKEQLPHFASAVEKVLLAQP 328
Query: 337 TSVPSERLFSQAGLVMTEQ 281
+S +ERLFS +Q
Sbjct: 329 SSAAAERLFSVLNSAFNDQ 347
>SB_9904| Best HMM Match : SMC_hinge (HMM E-Value=3.3)
Length = 252
Score = 31.1 bits (67), Expect = 0.72
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Frame = -1
Query: 502 WKINKSEDV--LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVG 338
W+ N + L EL YL V +E ++ W D+K Q P K L
Sbjct: 174 WECNDDRIINGLIAELPAYLAATADVVINTEERKVKWWHDHKEQLPHFASAVEKVLLAQP 233
Query: 337 TSVPSERLFSQAGLVMTEQ 281
+S +ERLFS +Q
Sbjct: 234 SSAAAERLFSVLNSAFNDQ 252
>SB_3166| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 499 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASAVSKVLLVQPSSAAAERVFSV 558
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 559 LNSAFNDQQ 567
>SB_24646| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 121
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 34 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSV 93
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 94 LNSAFNDQQ 102
>SB_10213| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 105
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 18 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSV 77
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 78 LNSAFNDQQ 86
>SB_6514| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 620
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 533 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSV 592
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 593 LNSAFNDQQ 601
>SB_51068| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 281
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 194 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSV 253
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 254 LNSAFNDQQ 262
>SB_48175| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 620
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 533 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSV 592
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 593 LNSAFNDQQ 601
>SB_47422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 173 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSV 232
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 233 LNSAFNDQQ 241
>SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038)
Length = 676
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 589 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSV 648
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 649 LNSAFNDQQ 657
>SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)
Length = 865
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 586 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSV 645
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 646 LNSAFNDQQ 654
>SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 705 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSV 764
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 765 LNSAFNDQQ 773
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 3529 LKAELPAYLAATADVVINKEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSV 3588
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 3589 LNSAFNDQQ 3597
>SB_13614| Best HMM Match : hATC (HMM E-Value=0.45)
Length = 228
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTPVGRL---KENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL + +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 150 LKAELPAYLAATADVVIDTEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSV 209
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 210 LNSAFNDQQ 218
>SB_38006| Best HMM Match : hATC (HMM E-Value=0.049)
Length = 130
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E L+ W D+K Q P K L + +S +ER+ S
Sbjct: 43 LKAELPAYLAATADVVINTEERKLKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVLSV 102
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 103 LNSAFNDQQ 111
>SB_29307| Best HMM Match : hATC (HMM E-Value=0.054)
Length = 235
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 148 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASGVKKVLLVQPSSAAAERVFSV 207
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 208 LNSAFNDQQ 216
>SB_57822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER+FS
Sbjct: 340 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASGVKKVLLVQPSSAAAERVFSV 399
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 400 LNSAFNDQQ 408
>SB_22805| Best HMM Match : hATC (HMM E-Value=0.00022)
Length = 310
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -1
Query: 475 LSDELSVYLRTPVGRL---KENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L +EL YL G + +E + W D+ P L K L I +S +ER+FS
Sbjct: 220 LVEELPSYLAAADGVVCTTEEEKVSWWADHVDTLPNLSVATKKILLIKPSSAAAERVFSL 279
Query: 304 AGLVMTEQRN 275
+ Q+N
Sbjct: 280 LQNAFSRQQN 289
>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
Length = 618
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 400 DYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQAGLVMTEQR 278
D + +FP+L K+A LTI ++ ER+FS MT R
Sbjct: 530 DGQPRFPRLSKVAQLVLTIPHSNAAEERVFSMIKKNMTPYR 570
>SB_27538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 LSDELSVYLRTP---VGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQ 305
L EL YL V +E ++ W D+K Q P K L + +S +ER FS
Sbjct: 263 LKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAEREFSV 322
Query: 304 AGLVMTEQR 278
+Q+
Sbjct: 323 LNSAFHDQQ 331
>SB_14647| Best HMM Match : hATC (HMM E-Value=0.021)
Length = 121
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 406 WRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQAGLVMTEQR 278
W D+K Q P K L + +S +ER+FS +Q+
Sbjct: 60 WHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 102
>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 400 DYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQAGLVMTEQR 278
D + +FP+L K+ LTI ++ ER+FS MT R
Sbjct: 554 DGQPRFPRLSKVTQLVLTIPHSNAAEERVFSMIKKNMTPHR 594
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,068
Number of Sequences: 59808
Number of extensions: 358972
Number of successful extensions: 1486
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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