Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20166
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-12|AAB54166.1|   98|Caenorhabditis elegans Hypothetical...    49   2e-06
U23454-7|AAC46515.1|  612|Caenorhabditis elegans Hypothetical pr...    41   8e-04
AF078781-4|AAC26918.1|  255|Caenorhabditis elegans Hypothetical ...    39   0.003
Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical pr...    36   0.017
AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical ...    33   0.21 
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    29   1.9  
AL031620-1|CAA20924.1|   62|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      29   3.4  
Z22176-2|CAD91716.2|  650|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U42436-11|AAF99898.1|  134|Caenorhabditis elegans Hypothetical p...    28   5.9  

>AF003139-12|AAB54166.1|   98|Caenorhabditis elegans Hypothetical
           protein F53G12.11 protein.
          Length = 98

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = -1

Query: 472 SDELSVYLRTPVGRLKENPLEIWRD--YKIQFPKLYKIAFKYLTIVGTSVPSERLFSQAG 299
           S E+ V+  T   R K +P   W++   + +FP L +IA +YLT   +S  SER+FS AG
Sbjct: 5   SAEVEVFYDTDNNR-KSDPAVFWQNPLNRSKFPLLSQIANRYLTTPASSAESERVFSGAG 63

Query: 298 LVMTEQRNRLKGKRLANFCFYIALTKNIG 212
            V T+ R ++  K L+   F     K +G
Sbjct: 64  RVSTKLRRKMSTKSLSKSVFLQQNQKVLG 92


>U23454-7|AAC46515.1|  612|Caenorhabditis elegans Hypothetical
           protein C10A4.1 protein.
          Length = 612

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = -1

Query: 466 ELSVYLRTPVGRLKENPLEIW--RDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQAGLV 293
           E+  YL T V ++  NP + W  R     +P+L K A +++     S   ER+FS AG++
Sbjct: 517 EVQRYLSTSVEQV--NPRQFWTSRVTTSVYPRLCKFAARFIICPSGSAEVERVFSTAGVI 574

Query: 292 MTEQRNRLKGKRLANFCFYIALTKNIGI 209
           + + R  L  +   +F  ++ L+KNI I
Sbjct: 575 LNKFRKSLYSE---HFKLHLFLSKNIPI 599


>AF078781-4|AAC26918.1|  255|Caenorhabditis elegans Hypothetical
           protein B0545.4 protein.
          Length = 255

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = -1

Query: 466 ELSVYLRTPVGRLKENPLEIWRD--YKIQFPKLYKIAFKYLTIVGTSVPSERLFSQAGLV 293
           E++ YL T V  +   P + W +   K  +P+L + A +++     S   ERLFS AG +
Sbjct: 140 EVTRYLSTAVESIF--PRDYWLNPLSKSSYPRLSQFARRFVICPTGSSEVERLFSTAGTI 197

Query: 292 MTEQRNRLKGKRLANFCFYIALTKNI 215
           +T+ R  L  +   NF   + L KNI
Sbjct: 198 LTKYRKTLTSE---NFKMLLTLNKNI 220


>Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical
           protein K09A11.1 protein.
          Length = 605

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = -1

Query: 466 ELSVYLRTPVGRLKENPLEIWRD--YKIQFPKLYKIAFKYLTIVGTSVPSERLFSQAGLV 293
           E++ YL T V  +   P + W +   K  +P+L K A +++     S  +E+LFS     
Sbjct: 509 EVTRYLSTAVEDV--TPRDFWLNDVTKASYPRLAKFARRFIICPTGSSAAEKLFSTDRAT 566

Query: 292 MTEQRNRLKGKRLANFCFYIALTKNI 215
           M E RN L  + L    F   L KNI
Sbjct: 567 MDEYRNTLSDENLKMLIF---LNKNI 589


>AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical
           protein C09E7.4 protein.
          Length = 640

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 421 NPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQAGLVMT 287
           +PLE W  Y  +FP+L KIA      + +S   E   S+  L  T
Sbjct: 572 SPLEFWSKYSSRFPRLTKIASNVFCCLSSSTTCESSISELKLFDT 616


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 124 PNLKQSIYKKHRCTSQYIVLP 62
           PN    +++KH CT+ Y +LP
Sbjct: 455 PNATSYVWQKHHCTTSYTILP 475


>AL031620-1|CAA20924.1|   62|Caenorhabditis elegans Hypothetical
           protein C18B12.1 protein.
          Length = 62

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 200 KCVVSVIFNFNTYIS*LIHIFVLINA--*PKTIDI*ETSMHFPIHRITIVVTD 48
           KC  S+ F+F   I  ++H+FV + A   P ++D  E    + I R +  + D
Sbjct: 6   KCTCSITFSFIELIKNIVHMFVTLIALVVPCSVDFTEQKFSWEIERSSYFLVD 58


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
           protein K04G2.8b protein.
          Length = 1188

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 105 YIRNIDALPNTSYYHRCDRSMHHIEK 28
           Y+R   + P  SYYHR + ++H I K
Sbjct: 133 YLRRKPSTPPASYYHRLNAALHTIVK 158


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
           protein K04G2.8a protein.
          Length = 1186

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 105 YIRNIDALPNTSYYHRCDRSMHHIEK 28
           Y+R   + P  SYYHR + ++H I K
Sbjct: 133 YLRRKPSTPPASYYHRLNAALHTIVK 158


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 105 YIRNIDALPNTSYYHRCDRSMHHIEK 28
           Y+R   + P  SYYHR + ++H I K
Sbjct: 133 YLRRKPSTPPASYYHRLNAALHTIVK 158


>Z22176-2|CAD91716.2|  650|Caenorhabditis elegans Hypothetical
           protein ZK1098.2 protein.
          Length = 650

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 418 PLEIWRDYKIQFPKLYKIAFKYLTIVGT 335
           PLE W  Y+ +FP++ +IA K   ++ +
Sbjct: 582 PLEFWAKYQERFPRMSEIAAKNFCVMSS 609


>U42436-11|AAF99898.1|  134|Caenorhabditis elegans Hypothetical
           protein C49H3.12 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -1

Query: 460 SVYLRTPVGRLKE-NPLEIWRDYKIQFPKLYKIAFKYLTIVGTSVPSERLFSQAGLVMTE 284
           ++Y+RT   R ++ N  + W     QFP L    F+  T+VG S P+    S + LV ++
Sbjct: 37  NMYIRTFAERKQKLNVFKSWYAATTQFPPLKNEFFENDTVVGESQPNSAPVSMS-LVYSK 95

Query: 283 QR 278
            R
Sbjct: 96  PR 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,995,263
Number of Sequences: 27780
Number of extensions: 300398
Number of successful extensions: 776
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)