Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20166
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18560.1 68414.m02315 hAT dimerisation domain-containing prot...    36   0.021
At4g27010.1 68417.m03885 expressed protein  ; expression support...    34   0.083
At1g72270.1 68414.m08355 expressed protein                             29   3.1  
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein...    28   4.1  

>At1g18560.1 68414.m02315 hAT dimerisation domain-containing protein
           / BED zinc finger domain-containing protein /
           transposase-related weak similarity to Tam3-transposase
           [Antirrhinum majus] GI:16064; contains Pfam profiles
           PF02892: BED zinc finger, PF05699: hAT family
           dimerisation domain
          Length = 676

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 20/80 (25%), Positives = 43/80 (53%)
 Frame = -1

Query: 517 VSARNWKINKSEDVLSDELSVYLRTPVGRLKENPLEIWRDYKIQFPKLYKIAFKYLTIVG 338
           ++ R  + + S +V+ DEL+ YL   +  ++ + L+ W+    ++P+L  +A  +L +  
Sbjct: 539 IARRKRRGSMSNNVV-DELTQYLSESIVPMQTDVLDWWKVNSGRYPRLSNMARDFLAVQA 597

Query: 337 TSVPSERLFSQAGLVMTEQR 278
           TS   E +F   G  + +Q+
Sbjct: 598 TSAAPEEIFCGKGEEIDKQK 617


>At4g27010.1 68417.m03885 expressed protein  ; expression supported by
            MPSS
          Length = 2535

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 23/65 (35%), Positives = 30/65 (46%)
 Frame = -2

Query: 591  EEPESDSDKSDKNEEAFSLWTDHHKLVHVTGKLTNLKTFCLTNFPFISELLLEDLKKIR* 412
            EE  S  D  D    AFS++        +   + ++   CL  FP ISELLL  LK  + 
Sbjct: 1002 EEIRSKMDNRDMESSAFSIFLKQAPFPVLLNAIMSMDISCLPEFPRISELLL--LKVSQP 1059

Query: 411  KFGEI 397
            K G I
Sbjct: 1060 KSGSI 1064


>At1g72270.1 68414.m08355 expressed protein
          Length = 2777

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -2

Query: 597  SNEEPESDSDKSDKNEEAFSLWTDHHKLVHVTGKLTNLKTFCLTNFPFISELLL 436
            + E+ +S  D  D    AFS++ +      +  ++ ++   CL  FP ++ELLL
Sbjct: 1273 TTEKIKSKMDIPDIESLAFSVFLEQTPFPVLLNEIMSMDISCLPEFPRLTELLL 1326


>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 276

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 525 HHKLVHVTGKLTNLKTFCLTNFPFISELLLED 430
           H+KL H T    N+K F   NF F + +L+ D
Sbjct: 143 HYKLTHSTNIFWNIKRFRCANF-FTTSMLISD 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,782,409
Number of Sequences: 28952
Number of extensions: 264489
Number of successful extensions: 698
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)