Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20165
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 138 4e-33
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 126 3e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 111 6e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 49 5e-06
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 36 0.035
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.046
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 36 0.046
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 33 0.25
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 32 0.43
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 1.3
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.3
SB_26607| Best HMM Match : K_tetra (HMM E-Value=3.3e-08) 29 3.0
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 138 bits (334), Expect = 4e-33
Identities = 60/126 (47%), Positives = 89/126 (70%)
Frame = +2
Query: 134 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVT 313
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+ G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 314 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 493
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 494 IVGVNK 511
++ VNK
Sbjct: 286 VILVNK 291
Score = 36.7 bits (81), Expect = 0.020
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = +1
Query: 508 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 603
+MD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 291 KMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 126 bits (303), Expect = 3e-29
Identities = 57/60 (95%), Positives = 58/60 (96%)
Frame = +2
Query: 194 MGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 373
MGKGSFKYAWVLDKLKAERE GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 111 bits (267), Expect = 6e-25
Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Frame = +2
Query: 266 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 445
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 446 TREHALLAFTLGVKQLIVGVNK--WIPLNHHTVSP 544
TREHA+L +LGV QLIV +NK + L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 50 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 196
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 48.8 bits (111), Expect = 5e-06
Identities = 28/110 (25%), Positives = 51/110 (46%)
Frame = +2
Query: 83 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGI 262
+I H D+GK+T T L+ G I +EA + K D ++ ER+ GI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 263 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 35.9 bits (79), Expect = 0.035
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Frame = +2
Query: 50 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAW 223
M K+ N+ VI HVD GKST T L+ K G I K +F ++
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71
Query: 224 VLDKLKAERELGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 400
L E I K + + + +ID+PGH DF + D A+++V
Sbjct: 72 TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131
Query: 401 AGTG 412
+G
Sbjct: 132 CVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 35.5 bits (78), Expect = 0.046
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Frame = +2
Query: 65 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 232
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 233 KLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 406
E A E S +T ID GH ++K I G + D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 407 TG 412
G
Sbjct: 231 AG 232
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 35.5 bits (78), Expect = 0.046
Identities = 35/135 (25%), Positives = 58/135 (42%)
Frame = +2
Query: 47 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 226
K+ + + NI V+GHVDSGK++ L + F+K Q +G
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKAL------STTASTASFDKNPQSQERGI-----T 76
Query: 227 LDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 406
LD + ++ + + E +T++D PGH IK +I G A +I G
Sbjct: 77 LDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG------AQIIGECG 130
Query: 407 TGEFEAGISKNGQTR 451
T E G ++G+ +
Sbjct: 131 T--IEGGFGQSGKVK 143
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 33.5 bits (73), Expect = 0.19
Identities = 24/65 (36%), Positives = 30/65 (46%)
Frame = +2
Query: 74 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 253
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 254 LGITI 268
GIT+
Sbjct: 1987 RGITV 1991
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 33.1 bits (72), Expect = 0.25
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Frame = +2
Query: 71 INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 223
+ + V+G+VD+GKST T G L G +R K E E+ +G +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289
Query: 224 VLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 364
+ + G +D A E+SK +T ID GH ++K I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 308 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 412
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 32.3 bits (70), Expect = 0.43
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 257 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 403
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +2
Query: 317 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 496
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 497 VGVNK 511
+ NK
Sbjct: 123 ILQNK 127
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 314 IIDAPGHRDFIKNMITGTSQADCAVLIV 397
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_26607| Best HMM Match : K_tetra (HMM E-Value=3.3e-08)
Length = 412
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 536 VSPDLRKSRRKYPHTSRRLATTQLLSLSCPFLDGTETTCWSFNQNALVQGMQWSVK 703
V+P +SRR S +LA Q+ S P G + W F + G+Q V+
Sbjct: 328 VTPGFSQSRRCKTTASAKLACLQVDSRGSPIQLGVQVFSWVFGYSVGCSGIQLGVR 383
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +1
Query: 517 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLELQPKCLGS 681
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E + +
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIEFAGAVVRN 1121
Query: 682 RD 687
D
Sbjct: 1122 ND 1123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,589,218
Number of Sequences: 59808
Number of extensions: 506247
Number of successful extensions: 1358
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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