Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20163
(493 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) 108 3e-24
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07) 72 2e-13
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 69 2e-12
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 69 2e-12
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 69 2e-12
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 69 2e-12
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07) 67 8e-12
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07) 66 1e-11
SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
Length = 154
Score = 108 bits (259), Expect = 3e-24
Identities = 47/62 (75%), Positives = 51/62 (82%)
Frame = +2
Query: 14 LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQE 193
LC YSGYKIYPGHGK V+ DGK F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +
Sbjct: 5 LCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQ 64
Query: 194 EE 199
EE
Sbjct: 65 EE 66
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 178 QKGPRGRTSKETY*KDPKVPTCDCWCSLSDIMAKRNMKPEV 300
+KG + SK+ ++ K SL +I+AKRN KPEV
Sbjct: 60 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 100
>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
Length = 139
Score = 72.1 bits (169), Expect = 2e-13
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +2
Query: 68 KVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 199
K GK F +LN +CE A LMRRNPR+VTWTVLYRRK KKG +EE
Sbjct: 38 KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEE 81
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 178 QKGPRGRTSKETY*KDPKVPTCDCWCSLSDIMAKRNMKPEV 300
+KG + SK+ ++ K SL +I+AKRN KPEV
Sbjct: 75 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 115
>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 113
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = +2
Query: 80 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 199
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEE 46
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 178 QKGPRGRTSKETY*KDPKVPTCDCWCSLSDIMAKRNMKPEV 300
+KG + SK+ ++ K SL +I+AKRN KPEV
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = +2
Query: 80 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 199
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEE 46
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 178 QKGPRGRTSKETY*KDPKVPTCDCWCSLSDIMAKRNMKPEV 300
+KG + SK+ ++ K SL +I+AKRN KPEV
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = +2
Query: 80 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 199
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEE 46
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 178 QKGPRGRTSKETY*KDPKVPTCDCWCSLSDIMAKRNMKPEV 300
+KG + SK+ ++ K SL +I+AKRN KPEV
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = +2
Query: 80 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 199
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEE 46
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 178 QKGPRGRTSKETY*KDPKVPTCDCWCSLSDIMAKRNMKPEV 300
+KG + SK+ ++ K SL +I+AKRN KPEV
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
Length = 104
Score = 66.9 bits (156), Expect = 8e-12
Identities = 29/40 (72%), Positives = 32/40 (80%)
Frame = +2
Query: 80 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 199
K F FLN +CE A LMRRNPR+VTWTVLYRR KKG +EE
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEE 46
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 178 QKGPRGRTSKETY*KDPKVPTCDCWCSLSDIMAKRNMKPEV 300
+KG + SK+ ++ K SL +I+AKRN KPEV
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
Length = 90
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/40 (72%), Positives = 32/40 (80%)
Frame = +2
Query: 80 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 199
K F FLN +CE A LMRRNPR+VTWTVLYR K KKG +EE
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEE 46
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 178 QKGPRGRTSKETY*KDPKVPTCDCWCSLSDIMAKRNMKPEV 300
+KG + SK+ ++ K SL +I+AKRN KPEV
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
>SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 178 QKGPRGRTSKETY*KDPKVPTCDCWCSLSDIMAKRNMKPEV 300
+KG + SK+ ++ K SL +I+AKRN KPEV
Sbjct: 2 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 42
>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 125 MRRNPRKVTWTVLYRR 172
M+RNPRK+ WT +R+
Sbjct: 1 MKRNPRKMKWTKAFRK 16
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,723,171
Number of Sequences: 59808
Number of extensions: 230935
Number of successful extensions: 505
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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