Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20163
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    79   2e-15
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    46   1e-05
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p...    31   0.34 
Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical p...    31   0.34 
Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical p...    31   0.34 
AC090999-23|AAP46263.1|  179|Caenorhabditis elegans Hypothetical...    29   2.4  
AC090999-22|AAK26159.1|  481|Caenorhabditis elegans Hypothetical...    29   2.4  
U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine rec...    28   4.2  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 34/57 (59%), Positives = 40/57 (70%)
 Frame = +2

Query: 17  CAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG 187
           C YSGYKI+PGHGK +V+ DGK   FL+ K      +RRNPR + WTVLYR K KKG
Sbjct: 6   CVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNKKG 62


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +2

Query: 17  CAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 172
           C +    IYPGHG   V+ D   F F  S+C      ++NPRK+ +T   RR
Sbjct: 6   CYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57


>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
           protein F49E2.5j protein.
          Length = 1100

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 160 PVQAQVQKGPRGRTSKETY*KDPKVPTCDCWCSLSDIMAKRNMKPE 297
           PVQ QV++  + + SK+T   + K PT D      D +  +  KPE
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTADDSMDFLDFVTAKPEKPE 588


>Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical
           protein F49E2.5g protein.
          Length = 528

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 160 PVQAQVQKGPRGRTSKETY*KDPKVPTCDCWCSLSDIMAKRNMKPE 297
           PVQ QV++  + + SK+T   + K PT D      D +  +  KPE
Sbjct: 460 PVQEQVKEQKKSKKSKKTSESESKRPTADDSMDFLDFVTAKPEKPE 505


>Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical
           protein F49E2.5f protein.
          Length = 611

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 160 PVQAQVQKGPRGRTSKETY*KDPKVPTCDCWCSLSDIMAKRNMKPE 297
           PVQ QV++  + + SK+T   + K PT D      D +  +  KPE
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTADDSMDFLDFVTAKPEKPE 588


>AC090999-23|AAP46263.1|  179|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.17b protein.
          Length = 179

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 332 ALMACSLCALRTSGFILRLAIMSLSEHQQSHVGT-FGSF*YVS 207
           ALM   LC + T  F L L I S S+H +    T F +F Y+S
Sbjct: 38  ALMLFYLCFIETCFFELHLIIQSTSDHHKQLCETIFTNFNYMS 80


>AC090999-22|AAK26159.1|  481|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.17a protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 332 ALMACSLCALRTSGFILRLAIMSLSEHQQSHVGT-FGSF*YVS 207
           ALM   LC + T  F L L I S S+H +    T F +F Y+S
Sbjct: 340 ALMLFYLCFIETCFFELHLIIQSTSDHHKQLCETIFTNFNYMS 382


>U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein136 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
 Frame = -2

Query: 321 LFSLRFTYFRLHITLSHNVTK*TPTIARWNFWVLLV--------RFFACSSSWPFLNLRL 166
           +F +    F+    +SH +   +P + R+++W+ L+         F    S+W FL++  
Sbjct: 77  IFDILTFLFQFKQIISHFIHASSPCLGRFSYWITLIDKSGFVIKDFSRRCSTWLFLSIAF 136

Query: 165 YRTVHV 148
            RT+ V
Sbjct: 137 IRTLIV 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,459,567
Number of Sequences: 27780
Number of extensions: 176520
Number of successful extensions: 349
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)