Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20163
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    66   1e-11
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            66   2e-11
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           58   3e-09
At1g30370.1 68414.m03713 lipase class 3 family protein similar t...    27   6.9  
At1g34710.1 68414.m04315 hypothetical protein similar to At3g433...    27   9.1  

>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 27/62 (43%), Positives = 38/62 (61%)
 Frame = +2

Query: 14  LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQE 193
           LC +SG KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ KK   
Sbjct: 7   LCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAA 66

Query: 194 EE 199
           +E
Sbjct: 67  QE 68


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 27/62 (43%), Positives = 38/62 (61%)
 Frame = +2

Query: 14  LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQE 193
           LC +SG KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ KK   
Sbjct: 7   LCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAA 66

Query: 194 EE 199
           +E
Sbjct: 67  QE 68


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 26/61 (42%), Positives = 32/61 (52%)
 Frame = +2

Query: 17  CAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 196
           C +    IYPGHG   V+ D K F F  SKC     M+RNPRKV WT  +R    K   +
Sbjct: 6   CWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTK 65

Query: 197 E 199
           +
Sbjct: 66  D 66


>At1g30370.1 68414.m03713 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile: PF01764: Lipase
          Length = 529

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 50  HGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR-KFKKGQEEE 199
           HGKT+VKV     +  NSK E     + +  + T   + R   F K + EE
Sbjct: 269 HGKTVVKVQSGFLSIYNSKSELTRYNKESASEQTMDEVKRLVNFFKDRGEE 319


>At1g34710.1 68414.m04315 hypothetical protein similar to At3g43370,
           At2g14780, At1g27810, At3g42760, At1g25784, At4g08890
          Length = 235

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 273 HNVTK*TPTIARWNFWVLLVRFF 205
           H V++  P I RW  +V +VR F
Sbjct: 5   HTVSELCPLITRWRIYVFVVRVF 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,097,278
Number of Sequences: 28952
Number of extensions: 170455
Number of successful extensions: 372
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)