Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20162
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 138 4e-34
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 113 2e-26
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 112 3e-26
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 101 1e-22
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 100 1e-22
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 93 4e-20
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 64 1e-11
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 62 5e-11
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 59 4e-10
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 58 7e-10
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 55 7e-09
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 55 9e-09
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 51 1e-07
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 49 5e-07
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 48 8e-07
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 47 2e-06
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 46 6e-06
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 42 5e-05
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.52
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 27 2.7
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 4.8
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 4.8
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 26 4.8
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 8.4
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 8.4
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 138 bits (335), Expect = 4e-34
Identities = 62/82 (75%), Positives = 68/82 (82%)
Frame = +2
Query: 281 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAG 460
M IKCVVVGDGAVGKTCLLISYTTN FP +Y+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MPTIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAG 60
Query: 461 QEDYDRLRPLSYPQTDSSLYVF 526
QEDYDRLRPLSYPQTD L F
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCF 82
Score = 46.8 bits (106), Expect = 2e-06
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +3
Query: 522 FFAGQPASFENVRAKWYPEVRHHCP 596
F PASFENV+ KW+PEV HHCP
Sbjct: 82 FSVTSPASFENVKEKWFPEVHHHCP 106
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 113 bits (271), Expect = 2e-26
Identities = 51/78 (65%), Positives = 59/78 (75%)
Frame = +2
Query: 293 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 472
K V+VGDGA GKTCLLI ++ FP Y+PTVF+NY A+V VDG+ I L LWDTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 473 DRLRPLSYPQTDSSLYVF 526
DRLRPLSYP + L F
Sbjct: 68 DRLRPLSYPDSHVVLICF 85
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 522 FFAGQPASFENVRAKWYPEVRHHC 593
F P S +NV+ KW EV H C
Sbjct: 85 FSVDAPESLDNVQEKWISEVLHFC 108
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 112 bits (270), Expect = 3e-26
Identities = 50/78 (64%), Positives = 59/78 (75%)
Frame = +2
Query: 293 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 472
K V+VGDGA GKTCLLI ++ FP Y+PTVF+NY A+V VDG+ + L LWDTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 473 DRLRPLSYPQTDSSLYVF 526
DRLRPLSYP + L F
Sbjct: 68 DRLRPLSYPDSHVILICF 85
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 522 FFAGQPASFENVRAKWYPEVRHHC 593
F P S +NV+ KW EV H C
Sbjct: 85 FAVDSPDSLDNVQEKWISEVLHFC 108
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 101 bits (241), Expect = 1e-22
Identities = 46/78 (58%), Positives = 56/78 (71%)
Frame = +2
Query: 293 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 472
K VVVGDGA GKT LL +T FP EY+PTVF+NY ++ VDGK + L LWDTAGQE+Y
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 473 DRLRPLSYPQTDSSLYVF 526
+RLRP+SY + L F
Sbjct: 70 ERLRPMSYAKAHIILVGF 87
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 522 FFAGQPASFENVRAKWYPEVRHHCP 596
F P S ENV KW E+ CP
Sbjct: 87 FAIDSPDSLENVSTKWIEEINTLCP 111
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 100 bits (240), Expect = 1e-22
Identities = 46/80 (57%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Frame = +2
Query: 293 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPINLGLWDTAGQE 466
K VVVGDG GKTCLLI +++ FP Y+PTVF+NY ++ + K I L LWDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 467 DYDRLRPLSYPQTDSSLYVF 526
+YDRLRPLSYP ++ L F
Sbjct: 76 EYDRLRPLSYPNSNVILLCF 95
Score = 38.7 bits (86), Expect = 6e-04
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +3
Query: 537 PASFENVRAKWYPEVRHHCP 596
PAS NV KWYPEV+H CP
Sbjct: 100 PASLNNVTEKWYPEVQHFCP 119
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 92.7 bits (220), Expect = 4e-20
Identities = 45/87 (51%), Positives = 55/87 (63%)
Frame = +2
Query: 266 G*KAKMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGL 445
G K K K V++GDGA GKT LL +T FP Y PT+F+NY ++ VDG I L L
Sbjct: 6 GSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSL 65
Query: 446 WDTAGQEDYDRLRPLSYPQTDSSLYVF 526
WDTAGQE+YD+LR LSY T + F
Sbjct: 66 WDTAGQEEYDQLRSLSYSDTHVIMICF 92
Score = 29.5 bits (63), Expect = 0.39
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 477 DSAPSLTHRRTLPYM--FFAGQPASFENVRAKWYPEVRHHCP 596
D SL++ T M F S ENV KW PEV +CP
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCP 116
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 64.1 bits (149), Expect = 1e-11
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 290 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQE 466
+K V++GD VGKTCL+ + F EY T+ D + +V+VD K + L LWDTAGQE
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 467 DYDRLRPLSYPQTDSSLYVFRWSTS 541
+ L Y D + V+ + S
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNS 93
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 62.5 bits (145), Expect = 5e-11
Identities = 30/68 (44%), Positives = 41/68 (60%)
Frame = +2
Query: 281 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAG 460
++ K VVVGDG VGK+ L I + F EY PT+ D+Y +DG+ L + DTAG
Sbjct: 6 LREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAG 65
Query: 461 QEDYDRLR 484
QE+Y +R
Sbjct: 66 QEEYSAMR 73
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 59.3 bits (137), Expect = 4e-10
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +2
Query: 290 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQE 466
IK +++GD VGK+CLL+ ++ ++F +I T+ D + +DGK I L +WDTAGQE
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 467 DYDRLRPLSY 496
+ + Y
Sbjct: 70 RFRTITTAYY 79
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 58.4 bits (135), Expect = 7e-10
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 278 KMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDT 454
K +K +++G+ VGKT ++ Y F +Y T+ D + V+VD K + L LWDT
Sbjct: 5 KKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDT 64
Query: 455 AGQEDYDRLRPLSYPQTDSSLYVF 526
AGQE + L Y D + V+
Sbjct: 65 AGQERFQSLGVAFYRGADCCVLVY 88
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 55.2 bits (127), Expect = 7e-09
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +2
Query: 293 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQED 469
K V++GD VGK+ LL+ +T N F E T+ ++ N+++D K I +WDTAGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 470 YDRLRPLSYPQTDSSLYVF 526
Y + Y +L V+
Sbjct: 72 YRAITSAYYRGAVGALIVY 90
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 54.8 bits (126), Expect = 9e-09
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 293 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQED 469
K +++GD VGK+CLL+ + + + YI T+ ++ ++GK + L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 470 YDRLRPLSYPQTDSSLYVF 526
+ + Y + V+
Sbjct: 70 FRTITSSYYRGAHGIIIVY 88
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 50.8 bits (116), Expect = 1e-07
Identities = 23/69 (33%), Positives = 39/69 (56%)
Frame = +2
Query: 275 AKMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDT 454
A +++ + V+G +VGK+ L + Y N F Y PT+ + +S N+ G+ + DT
Sbjct: 2 APIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDT 61
Query: 455 AGQEDYDRL 481
AGQ++Y L
Sbjct: 62 AGQDEYSIL 70
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 49.2 bits (112), Expect = 5e-07
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +2
Query: 281 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTA 457
++ K V +G+ +VGKT L+ + + F Y T+ D S + ++ + + L LWDTA
Sbjct: 9 LRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 68
Query: 458 GQEDYDRLRPLSYPQTDSSLYV 523
GQE + L P SY + DSS+ +
Sbjct: 69 GQERFRSLIP-SYIR-DSSVAI 88
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 48.4 bits (110), Expect = 8e-07
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +2
Query: 293 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPINLGLWDTAGQE 466
K V++GD AVGK+ L++ + + F T+ + + + + L +WDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 467 DYDRLRPLSYPQTDSSLYVF 526
Y L P+ Y + ++ V+
Sbjct: 76 RYKSLAPMYYRNANCAIVVY 95
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +2
Query: 290 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQE 466
IK ++GD ++GKT L+++Y +F E T+ N+ + + I +WD GQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 467 DYDRLRPLSYPQTDSSLYVF 526
++ + P+ + L++F
Sbjct: 71 EFVNMLPMVCNDAVAILFMF 90
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 45.6 bits (103), Expect = 6e-06
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 293 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQED 469
K V+VGDG GKT + + T F +YI T+ + + + + I +WDTAGQE
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 470 YDRLRPLSYPQTDSSLYVF 526
LR Y Q + +F
Sbjct: 71 LGGLRDGYYIQGQCGIIMF 89
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 42.3 bits (95), Expect = 5e-05
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +2
Query: 290 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPINLGLWDT 454
+K V+ G GK+CLL + N + + TV ++++ ++ G K I L +WDT
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 455 AGQEDY 472
AGQE +
Sbjct: 70 AGQEKF 75
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.52
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 296 CVVVGDGAVGKTCLL 340
C++VGD A GKTC+L
Sbjct: 1872 CILVGDTATGKTCIL 1886
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 496 VREGAESIVVFLSGCIPEAQVDWLSIYHDIRR 401
V +GA+ F SGC Q W S +DI R
Sbjct: 351 VPDGAKFFAYFASGCTYAGQAVWFSWANDICR 382
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 296 CVVVGDGAVGKTCLLISYTTN 358
C VVG + GKT LL S+ N
Sbjct: 424 CFVVGSKSCGKTALLSSFINN 444
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 218 ELFCVSIRCVLFLTKIG*KAKMQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYI 379
EL ++ L T+ G +++I +CV+ GD G CL F G++I
Sbjct: 1040 ELIYWGLKRELCSTETGSAVTLESILLQCVMFGDKIYGAYCLACLMAQRVFRGDHI 1095
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 475 IVVFLSGCIPEAQVDWLSIYHDIRRVIVEYCRYIFAGKSI 356
+V FL+G +P+A + L DI + E C G I
Sbjct: 218 VVPFLNGSLPQADLPPLRTIEDIDNLTREQCLTFIQGYGI 257
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 429 QSTWASGIQPDRKTTIDSAPSLTHRRTLPYMFF 527
+ + S PD ++ S PS++ R TLP F
Sbjct: 1485 EGEFQSSYVPDYNPSLRSTPSVSSRSTLPQRVF 1517
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 462 RKTTIDSAPSLTHRRTLPYM 521
RK T+ PS+ H R+ PY+
Sbjct: 555 RKNTLTRRPSIRHARSSPYI 574
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,253
Number of Sequences: 5004
Number of extensions: 51518
Number of successful extensions: 174
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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