Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20160
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    29   0.44 
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    27   1.4  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    25   7.2  
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ...    25   9.5  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   9.5  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    25   9.5  

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 333 LGQITKQPPAANMMEMIWDDELAATA 410
           +GQIT++  A    EMIWD ++A +A
Sbjct: 410 IGQITEKDVARVASEMIWDKDIAVSA 435


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 82  ITSENILYSSYESQLKRANQLKFRVLCINFLIKMIPLV 195
           I  E +  + Y SQL   NQ  F  L    LI+MIP++
Sbjct: 65  IGDEPLQKNLYLSQLSVTNQTLFYALISQHLIEMIPII 102


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 414 RWSDQCIPAHDRAAQRDL 467
           RW D+CI AH R   ++L
Sbjct: 173 RWLDRCIQAHKRPETQNL 190


>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 353 LFGNLSESNSLSETVVCVHNGL 288
           +F  L+ S ++ +T+ CVH GL
Sbjct: 143 IFDFLTLSATIDDTIFCVHGGL 164


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 511 ECQVAARFCPTGNLP 467
           +C +A  +CPT NLP
Sbjct: 321 KCLIAEGWCPTANLP 335


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +2

Query: 407 CSTLVRSMYTRSRPRCPT*FGQIPCWTEPRSHLTLVHQLNHPTLR 541
           CS    S      P+C   +  +PCW   +S    V+  N  T +
Sbjct: 4   CSICNESEIKYKCPKCSFPYCSLPCWKIHQSQCETVNDNNTTTFK 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,741
Number of Sequences: 5004
Number of extensions: 44099
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)