Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20160
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0952 - 24731799-24731901,24732169-24732231,24732941-247339... 34 0.064
12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842... 31 0.45
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459 31 0.45
06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258 30 1.0
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 30 1.4
06_03_0700 + 23650275-23650299,23650381-23652350 29 1.8
05_07_0343 - 29404816-29405412 29 1.8
02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606 29 1.8
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 28 4.2
08_02_0715 - 20352613-20352852,20352926-20352982,20354208-203543... 28 5.5
06_03_1300 + 29154942-29154997,29155390-29155554,29156169-291562... 28 5.5
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 5.5
11_06_0514 - 24477720-24479915 27 7.3
08_02_0684 + 20031661-20031957,20032094-20032512,20033600-200336... 27 7.3
07_01_0203 + 1469575-1470045 27 7.3
07_01_0199 - 1420982-1421452 27 7.3
07_01_0195 - 1387831-1388301 27 7.3
07_01_0191 - 1354678-1355148 27 7.3
07_01_0187 - 1321525-1321995 27 7.3
04_04_0605 + 26549904-26551939,26553931-26554180,26554764-265548... 27 7.3
02_05_1154 + 34506915-34507467,34508334-34508388,34508933-34509038 27 7.3
08_02_0979 - 23252004-23252038,23253874-23254624 27 9.7
>12_02_0952 -
24731799-24731901,24732169-24732231,24732941-24733980,
24734094-24734339
Length = 483
Score = 34.3 bits (75), Expect = 0.064
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = -3
Query: 386 PNHFHHVSCWGLFGNLSESNSLSETVVCVHNGLFLVSSQTSRF*NCFPEPQPSVVARIAP 207
PN HH+ W L +S V C H G+ L+ +T R+ N P P ++ R
Sbjct: 180 PNQNHHLRGWWTDAVLPLHDSYLACVDCYH-GIILIDVKTQRYFNYIPLPAEAMRGRRVD 238
Query: 206 KTN 198
K N
Sbjct: 239 KYN 241
>12_02_0947 +
24680119-24681497,24682213-24682275,24683380-24684239,
24684399-24684772,24685932-24686112,24686201-24686220
Length = 958
Score = 31.5 bits (68), Expect = 0.45
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 386 PNHFHHVSCWGLFGNLSESNSLSETVVCVHNGLFLVSSQTSRF*NCFPEP 237
PN HH+ W L +S V C H G+ L+ +T R+ N P P
Sbjct: 208 PNQNHHLRGWWTDAVLPLHDSYLACVDCYH-GIILIDVKTQRYFNYIPLP 256
>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
Length = 867
Score = 31.5 bits (68), Expect = 0.45
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 421 DQR*AVAANSSSQIISIMLAAGGCLVICPRATVCLRRLC 305
DQR II ++L A CL ICP++ ++++C
Sbjct: 795 DQRIMAPTTEEKDIILLVLVAFACLQICPKSRPTMQQVC 833
>06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258
Length = 522
Score = 30.3 bits (65), Expect = 1.0
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -3
Query: 422 GPALSSSCQFIVPNHFHHVSCW-GLFGNLSESNSLSETVVCVHNGLF---LVSSQTSRF* 255
G L C IVP H W +G + S S + +CV + ++S +T +
Sbjct: 62 GDVLDRRCHDIVPRVMPHYRAWMSRYGKVFVSWSGATPALCVGDYAMVKQILSDRTGLYG 121
Query: 254 NCFPEPQPSVVARI 213
PEP+PS++A I
Sbjct: 122 K--PEPEPSILALI 133
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -3
Query: 488 LSNRESAQITLGSAVVSGYTLIGPALSSSCQFIVPNHFHHVSCWGLFGNLSESNSLSETV 309
L+ +E +I +A G T AL + I N F+ GL GN+ ++ T+
Sbjct: 332 LAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRM-GVTNTI 390
Query: 308 VCVHNG 291
VC ++G
Sbjct: 391 VCNYDG 396
>06_03_0700 + 23650275-23650299,23650381-23652350
Length = 664
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 70 DVSXITSENILYSSYE-SQLKRANQLKFRVLCINFLIKMIPLVLFVLGAILATTEG 234
D++ + N + S Y + L A QLK RVL ++ +K+ + LG++ A+ EG
Sbjct: 582 DLAELDLSNCMVSDYGVAVLASARQLKLRVLSLSGCLKVTQKSVPFLGSMSASLEG 637
>05_07_0343 - 29404816-29405412
Length = 198
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 297 VDAHNRLRQTVALGQITKQPPAANMMEMIWDDELAATAQRWSD 425
VD HN+LR L QP M WD++LA A+RWSD
Sbjct: 60 VDGHNQLRARYGL-----QP-------MRWDNKLARQARRWSD 90
>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
Length = 873
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 240 LRKAVLKSGGLTAYEKQAIVDAHNRLRQTVALGQITKQPPAANMMEMIWDDELAATAQRW 419
+++A+ S G K+A D N L+ + L I +++ +WDD L Q W
Sbjct: 273 IKEAIQSSSG-----KEATTDNLNCLQ--LGLSNIVNNKRFLIILDDVWDDALKENGQCW 325
Query: 420 SDQCIP 437
C+P
Sbjct: 326 ERLCLP 331
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 416 ALSSSCQFIVPNHFHHVSCWGLFGNLSESNSLSETVV 306
A S C FI+ N H++SC N+ S E VV
Sbjct: 457 ASSKFCAFIILNGMHNISCEVTIQNMESDLSRMEKVV 493
>08_02_0715 -
20352613-20352852,20352926-20352982,20354208-20354339,
20354754-20354828,20355779-20355943,20356031-20356263,
20356484-20356574,20356789-20357223,20357911-20357976,
20358688-20358807,20358915-20359121
Length = 606
Score = 27.9 bits (59), Expect = 5.5
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 15/99 (15%)
Frame = +3
Query: 198 VCFGSYSRNNRRLWLRKAVLKSGGLTAYEKQAIVDAHNRLRQ---------TVALGQITK 350
+C +YS N +W + GG+ A A ++ +NR RQ T AL Q TK
Sbjct: 483 MCGRAYSPNFLFMWPTARISVMGGIQAAGVLAQIEKNNRKRQGVEVLSKMITFALTQWTK 542
Query: 351 QPPAANMMEMI--WDDE---LAATAQRWSDQCI-PAHDR 449
A +++ +D E +TA+ W D I PA R
Sbjct: 543 DEEEAFKAKVVEAYDKEGSPYYSTARLWDDGIIDPADTR 581
>06_03_1300 +
29154942-29154997,29155390-29155554,29156169-29156246,
29156353-29156632,29156809-29157258
Length = 342
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 121 QLKRANQLKFRVLCINFLIKMIPLVLFVLGAILATTEGCGS 243
+LKR +++ ++ I + IPL +F+ GA + G GS
Sbjct: 71 ELKRTSEMFIQLKTIYGSVASIPLKIFITGATMHMAGGSGS 111
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +1
Query: 397 WQLLLNAGPINVYPLTTALPNVIWA----DSLLDRTSQPLD 507
WQ L +GPI + P+ N++W +SL ++ P D
Sbjct: 299 WQRFLPSGPIALLPIGDNYSNIVWTMSPEESLRHKSMSPED 339
>11_06_0514 - 24477720-24479915
Length = 731
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 355 GCLVICPRATVCLRRLCASTMA 290
GC + C ++ CLR LC S+ A
Sbjct: 522 GCCISCSSSSKCLRCLCVSSSA 543
>08_02_0684 +
20031661-20031957,20032094-20032512,20033600-20033606,
20033905-20033982,20034086-20034121
Length = 278
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 373 IMLAAGGCLVICPRATVCLRRLCASTMACF 284
+ LA G C +I P A + LRRL +A F
Sbjct: 198 LWLAVGHCCLIIPYAVLRLRRLARKKVASF 227
>07_01_0203 + 1469575-1470045
Length = 156
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 360 AANMMEMIWDDELAATAQRWSDQCIPAHDRAAQR-DLGRFPVGQNLA 497
A + + WDD LAA AQ +++Q A D A + D + G+NL+
Sbjct: 30 AVGVPALSWDDNLAAYAQGYANQ--RAGDCALRHSDRNNYQYGENLS 74
>07_01_0199 - 1420982-1421452
Length = 156
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 360 AANMMEMIWDDELAATAQRWSDQCIPAHDRAAQR-DLGRFPVGQNLA 497
A + + WDD LAA AQ +++Q A D A + D + G+NL+
Sbjct: 30 AVGVPALSWDDNLAAYAQGYANQ--RAGDCALRHSDRNNYQYGENLS 74
>07_01_0195 - 1387831-1388301
Length = 156
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 360 AANMMEMIWDDELAATAQRWSDQCIPAHDRAAQR-DLGRFPVGQNLA 497
A + + WDD LAA AQ +++Q A D A + D + G+NL+
Sbjct: 30 AVGVPALSWDDNLAAYAQGYANQ--RAGDCALRHSDRNNYQYGENLS 74
>07_01_0191 - 1354678-1355148
Length = 156
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 360 AANMMEMIWDDELAATAQRWSDQCIPAHDRAAQR-DLGRFPVGQNLA 497
A + + WDD LAA AQ +++Q A D A + D + G+NL+
Sbjct: 30 AVGVPALSWDDNLAAYAQGYANQ--RAGDCALRHSDRNNYQYGENLS 74
>07_01_0187 - 1321525-1321995
Length = 156
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 360 AANMMEMIWDDELAATAQRWSDQCIPAHDRAAQR-DLGRFPVGQNLA 497
A + + WDD LAA AQ +++Q A D A + D + G+NL+
Sbjct: 30 AVGVPALSWDDNLAAYAQGYANQ--RAGDCALRHSDRNNYQYGENLS 74
>04_04_0605 +
26549904-26551939,26553931-26554180,26554764-26554829,
26555194-26555388,26555830-26556141,26556537-26556595,
26557138-26557381,26557466-26557528,26557997-26558386
Length = 1204
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +1
Query: 418 GPINVYPLTTALPNVIWAD-----SLLDRTSQPLDTRPPTEPSDSAP 543
G N L + P +W D ++L+ T PLD P++P SAP
Sbjct: 185 GAFNNLSLISRQPMQVWVDYDGATTVLNVTMAPLDVPKPSKPLISAP 231
>02_05_1154 + 34506915-34507467,34508334-34508388,34508933-34509038
Length = 237
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 272 QTSRF*NCFPEPQPSVVARIAPKTNNTKG 186
Q RF CF P PS A +AP+ ++G
Sbjct: 74 QRRRFPRCFTPPAPSFSAGVAPEPAYSRG 102
>08_02_0979 - 23252004-23252038,23253874-23254624
Length = 261
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 484 DRTSQPLDTRPPTEPSDSAP 543
D + QPLD RPP+ S AP
Sbjct: 194 DSSFQPLDLRPPSSSSSVAP 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,110,098
Number of Sequences: 37544
Number of extensions: 303903
Number of successful extensions: 864
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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