Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20160
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)                   31   0.61 
SB_8808| Best HMM Match : SCP (HMM E-Value=0.036)                      30   1.4  
SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)                   29   1.9  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_168| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.7  
SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)                  27   7.5  
SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_33929| Best HMM Match : Pkip-1 (HMM E-Value=3)                      27   7.5  
SB_4159| Best HMM Match : Vpu (HMM E-Value=2)                          27   7.5  
SB_48285| Best HMM Match : Torsin (HMM E-Value=0)                      27   9.9  
SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)               27   9.9  

>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1164

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 377  NDLGR*IGSYCSTLVRSMYTRS----RPRCPT*FGQIPCWTEPRSHLTLVHQLNHPT 535
            N LG   G+   ++ R +Y  S    RPRCP   GQ P  + P+ +  LV     P+
Sbjct: 985  NTLGAIAGTVNQSMSRCLYAESARTRRPRCPPGSGQTPGRSSPKGNGVLVFDRPKPS 1041


>SB_8808| Best HMM Match : SCP (HMM E-Value=0.036)
          Length = 88

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 23/76 (30%), Positives = 33/76 (43%)
 Frame = +3

Query: 270 LTAYEKQAIVDAHNRLRQTVALGQITKQPPAANMMEMIWDDELAATAQRWSDQCIPAHDR 449
           +T +EK+ + DAHN  R    +      PP      M W  +LA  AQ W+D     +  
Sbjct: 1   MTGFEKECL-DAHNMYRARHGV------PP------MTWSRDLARDAQSWADTLARENKF 47

Query: 450 AAQRDLGRFPVGQNLA 497
                L +   G+NLA
Sbjct: 48  EHDSSLKKLGEGENLA 63


>SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)
          Length = 631

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/80 (28%), Positives = 34/80 (42%)
 Frame = +3

Query: 258 KSGGLTAYEKQAIVDAHNRLRQTVALGQITKQPPAANMMEMIWDDELAATAQRWSDQCIP 437
           K G ++ +EK+ + DAHN  R    +      PP      + W+ EL   AQ W+D    
Sbjct: 201 KPGQMSGFEKECL-DAHNMYRMRHGV------PP------LTWNSELTRDAQSWADTLAR 247

Query: 438 AHDRAAQRDLGRFPVGQNLA 497
            +       L     G+NLA
Sbjct: 248 ENKFEHHPALKELGQGENLA 267


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 156  VVYKLFN*NDSLSVVCFGSYSRNNRRLWLRKAVLKSG 266
            +++KL   +  LS  C G YSR+N   WL K VL+ G
Sbjct: 1395 LIFKLSELSLRLSKSCKG-YSRSNDLRWLTKRVLEMG 1430


>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1249

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 494 EVLSNRESAQITLGSAVVSGYTLIGPALSSSCQ-FIVPNHF--HHVSCWGLFGNLSESNS 324
           + L+NR       G+ V+SG+  +   L ++C+  IV NH+  H      L   + +S S
Sbjct: 296 KALANRLPGGFLPGTDVISGFLFVCRQLWTTCEGLIVINHYSLHEYVADALSKAIKDSPS 355

Query: 323 LSET 312
           +S T
Sbjct: 356 MSAT 359


>SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1328

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 282  EKQAIVDAHNRLRQTVALGQITKQPPAANMMEMIWDDELAATAQRW 419
            E +  + A N+ +    L Q    PPAA+ M  IW+  + +  QRW
Sbjct: 1165 ELREAIGAWNQQKIANFLTQRGINPPAASHMGGIWERVIRSERQRW 1210


>SB_168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 494 EVLSNRESAQITLGSAVVSGYTLIGPALSSSCQ-FIVPNHF--HHVSCWGLFGNLSESNS 324
           + L+NR       G+ V+SG+  +   L ++C+  IV NH+  H      L   + +S S
Sbjct: 14  KALANRLPGGFLPGTDVISGFLFVCRQLWTTCEGLIVINHYSLHEYVADALSKAIKDSPS 73

Query: 323 LSET 312
           +S T
Sbjct: 74  MSAT 77


>SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)
          Length = 420

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 197 CLFWELFSQQQKVVAQESSFKIWRFDCLRETGHC 298
           C   E+F+  +K + +++S  + +F CL  TG C
Sbjct: 105 CADAEIFASAKKYLREKNSKYVPKFHCLPRTGTC 138


>SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 390 DELAATAQRWSDQCIPAH 443
           DELA+T QR  D+ IP H
Sbjct: 477 DELASTVQRLEDKVIPVH 494


>SB_33929| Best HMM Match : Pkip-1 (HMM E-Value=3)
          Length = 321

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 156 VVYKLFN*NDSLSVVCFGSYSRNNRRLWLRKAVLKSG 266
           +++KL   +  +S  C G YSR+N   WL K VL+ G
Sbjct: 23  LIFKLSEHSLRMSKSCKG-YSRSNDLRWLTKRVLEMG 58


>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
          Length = 779

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 280 TRNRPLWTHTTVSDRLLLSDKLPNSPQQLT*WK*FGTMNWQLLLNAGPINVYPLTTALP 456
           T  R  W+ T V+  L L D  P     +T     G ++ + L   GP+++ PLTT  P
Sbjct: 85  THYRANWSSTAVAAALELVDP-PGCRNSIT----GGPVSMEPLTTGGPVSMEPLTTGGP 138



 Score = 27.1 bits (57), Expect = 9.9
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +1

Query: 292 PLWTHTTVSDRLLLSDKLPNSPQQLT*WK*FGTMNWQLLLNAGPINVYPLTTALP 456
           PL T   VS   L +D  P S + LT     G ++ + L   GP+N+ PLTT  P
Sbjct: 330 PLTTDGPVSMEPLTTDG-PVSMEPLTTG---GPVSMEPLTTGGPVNMEPLTTGGP 380


>SB_48285| Best HMM Match : Torsin (HMM E-Value=0)
          Length = 636

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 398 QFIVPNHFHHVSCWGLFGNLSESNSLSETVVCVHNGLFL 282
           +FI+P HF H S   L+ +  +    S    C   GLF+
Sbjct: 441 KFIIPLHFPHQSLAALYRSQLQQWITSNVTRCSKGGLFV 479


>SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)
          Length = 2056

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 218  SQQQKVVAQESSFKIWRFDCLRETGHCGRT 307
            S+Q+K V ++   + WRF     TG C RT
Sbjct: 1164 SEQEKDVIKKKYMEAWRFIYCNVTGKCLRT 1193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,198,473
Number of Sequences: 59808
Number of extensions: 336834
Number of successful extensions: 947
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)