Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20160
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   3.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   6.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   6.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   6.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   8.1  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
 Frame = +3

Query: 339 QITKQPPAANMMEMIWDDELAATAQRWSDQ--------CIPAHDRAAQRDLGRFPVGQNL 494
           Q  KQ P  N       +E+    + W D+         +P    +A   L   P+G+NL
Sbjct: 193 QFYKQQPDLNYRNSDVREEMKNIMKFWLDKGIDGFRIDAVPHLFESANISLDEPPLGKNL 252

Query: 495 AAT*HSSTN*TI 530
             + H+S N T+
Sbjct: 253 NLSLHASLNHTL 264


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 306 HNRLRQT-VALGQITKQPPAANMMEMIWDDELAATAQRWSD 425
           ++ +R T ++ G   ++    N M+ IW+D++  T  RW +
Sbjct: 33  NDNIRNTLISNGDYIEENNMPNGMQ-IWNDKVFITIPRWKN 72


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 519 WWTSVKWLRGSVQQGICPNHVGQRGR 442
           +W     L  + Q  + PN VG +G+
Sbjct: 386 FWQPKPTLEDAPQNSLLPNFVGYKGK 411


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 368 VSCWGLFGNLSESNSLSETVVCVHNGLF 285
           + C G  GN+    SL++++  +H   F
Sbjct: 12  IVCQGTTGNILRGESLNKSLPILHEWKF 39


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 368 VSCWGLFGNLSESNSLSETVVCVHNGLF 285
           + C G  GN+    SL++++  +H   F
Sbjct: 12  IVCQGTTGNILRGESLNKSLPILHEWKF 39


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 368 VSCWGLFGNLSESNSLSETVVCVHNGLF 285
           + C G  GN+    SL++++  +H   F
Sbjct: 12  IVCQGTTGNILRGESLNKSLPILHEWKF 39


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 476 PCWTEPRSHLTLVHQLNHPTL 538
           PC TEP S +T    +   TL
Sbjct: 230 PCCTEPYSDITFNITMRRKTL 250


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 395 FIVPNHFHHVSCWGLFGNL 339
           F+VP+ F    C  LFG +
Sbjct: 92  FVVPHQFIKRICSALFGKI 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,103
Number of Sequences: 438
Number of extensions: 3222
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)